View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_31 (Length: 251)
Name: NF1310_high_31
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 41783813 - 41784059
Alignment:
| Q |
1 |
aaatgtatcaaaatttcccattttatgcagatattgaaaccaagatcacaaaaatccagaagcttattaagaacgaaaaccaaagcaaaaaagatgcgag |
100 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41783813 |
aaatgtatcataatttcccattttatgcaggcattgaaaccaagatcacaaaaatccagaagcttattaagaacgaaaaccaaagcaaaaaagatgcgag |
41783912 |
T |
|
| Q |
101 |
ccctagacgttctagaaaagatacagaacttatgggattaacggaggacttatacaagcagtaccagtcactcaatgcacaatatgataatctcattggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41783913 |
tcctagacgttctagaaaagatacagaacttatgggattaacggaggacttatacaagcagtaccagtcacttaatgcacaatatgataatctcattggg |
41784012 |
T |
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| Q |
201 |
aaagtggtttctaaccaaagaaaagatttaatgttttcatctcactc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41784013 |
aaagtggtttctaaccaaagaaaagatttaatgttttcatctgactc |
41784059 |
T |
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