View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_32 (Length: 251)
Name: NF1310_high_32
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3803048 - 3803287
Alignment:
| Q |
1 |
cttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcgcttaac |
100 |
Q |
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| T |
3803048 |
cttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcacttaac |
3803147 |
T |
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| Q |
101 |
cccttaggattaccgcttaattttccggccaggggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacatgg |
200 |
Q |
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| T |
3803148 |
cccttaggattaccgcttaattttccggccaagggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacatgg |
3803247 |
T |
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| Q |
201 |
ttgcagctggcaagtgaaactttcgtaccttgttgttcat |
240 |
Q |
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| T |
3803248 |
ttgcagctggtaagtgaaactttcgtaccttgttgttcat |
3803287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 397729 - 397497
Alignment:
| Q |
8 |
tgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcgcttaaccccttag |
107 |
Q |
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|||||||||| | ||||||| ||| |||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
397729 |
tgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattccaataactaggccaactcccattctttgaagttcgcttaaccccttag |
397630 |
T |
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| Q |
108 |
gattaccgcttaattttccggccaggggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacatggttgcagc |
207 |
Q |
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| T |
397629 |
gattaccgcttaattttccggccaagggaactagaacttggcgataaagtccagtgcatacaaggacactgcatatatcaaacacagacatggttgctgc |
397530 |
T |
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| Q |
208 |
tggcaagtgaaactttcgtaccttgttgttcat |
240 |
Q |
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| T |
397529 |
tggcaagtgaaattttcctaccttgttgttcat |
397497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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