View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_6 (Length: 492)
Name: NF1310_high_6
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 25529395 - 25529253
Alignment:
| Q |
28 |
caccaccaccaccgccacgccctttctttgaatgtactggaagttatgctgttgatgggtctaatggatcgtctgcgccgcttgaatattcgtcctcaat |
127 |
Q |
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| T |
25529395 |
caccaccaccaccgccacaccctttctttgaatgtactggaagttatgctgttgatgggtctagtgtatcgtctgcgccgcttgaatattcgtcctcatt |
25529296 |
T |
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| Q |
128 |
tgatctaaaggccaaaaggtggtaaaatgggcttatgagctaga |
171 |
Q |
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| T |
25529295 |
tgat-tcgagaccaaaaggtggtaaaatgggcttatgagctaga |
25529253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 25529156 - 25529106
Alignment:
| Q |
316 |
atttgaaaacaaaagataaatattttgttcctcataaaccaacaattaata |
366 |
Q |
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| T |
25529156 |
atttgaaaacaaaagataaatattttgttcctcataaaccaacaattaata |
25529106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 31430189 - 31430326
Alignment:
| Q |
33 |
ccaccaccgccacgccctttctttgaatgtactggaagttatgctgttgatg---ggtctaatggatcgtctgcgccgcttgaatattcgtcctcaattg |
129 |
Q |
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| T |
31430189 |
ccaccgccgccgcggcctttctttgaacgtactggaagttatgctgctgctgctggaccgagtggaccgtctgcgccgcttgaatattcatcctcgtttg |
31430288 |
T |
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| Q |
130 |
atctaaaggccaaaaggtggtaaaatgggcttatgagct |
168 |
Q |
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| T |
31430289 |
atccaa-ggccaaaaggcggtaaaatgggcttaggagct |
31430326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 11429768 - 11429917
Alignment:
| Q |
28 |
caccaccaccaccgccacgccctttctttgaatgtactggaagttatgctgttgatgggtctaatggatcgtctgcgccgcttgaatattcgtcctcaat |
127 |
Q |
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|||||||||| |||||| || |||||||||||||| || ||||||||||| || |||| ||| |||| |||||||||||||||||||||| | ||| | |
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| T |
11429768 |
caccaccaccgtcgccacaccatttctttgaatgtattgaaagttatgctgctgttgggcctagtggaccgtctgcgccgcttgaatattcattctcgtt |
11429867 |
T |
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| Q |
128 |
tgatctaaaggccaaaaggtggtaaaatgggcttatgagctagattagctg |
178 |
Q |
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||||| | |||||||||| ||||||||||||||| ||||| || |||||| |
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| T |
11429868 |
tgatc-cagggccaaaaggaggtaaaatgggcttaggagctggactagctg |
11429917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 32849446 - 32849297
Alignment:
| Q |
28 |
caccaccaccaccgccacgccctttctttgaatgtactggaagttatgctgttgatgggtctaatggatcgtctgcgccgcttgaatattcgtcctcaat |
127 |
Q |
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|||||||||| |||||| || |||||||||||||| || ||||||||||| || |||| ||| |||| |||||||||| ||||||||||| ||||| | |
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| T |
32849446 |
caccaccaccgtcgccacaccatttctttgaatgtattgaaagttatgctgctgttgggcctagtggaccgtctgcgccacttgaatattcatcctcgtt |
32849347 |
T |
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| Q |
128 |
tgatctaaaggccaaaaggtggtaaaatgggcttatgagctagattagctg |
178 |
Q |
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||||| |||||||||| |||||||||||||| ||||| || |||||| |
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| T |
32849346 |
tgatc-cggggccaaaaggcagtaaaatgggcttaggagctggactagctg |
32849297 |
T |
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