View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_9 (Length: 422)
Name: NF1310_high_9
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 67 - 393
Target Start/End: Original strand, 25803 - 26128
Alignment:
| Q |
67 |
tcatatgcatgttaaaacgcaagtgttagacaccattatttatatagtctgaaagcatttcatttttacaccaaatgttcatgtatccagtctctcataa |
166 |
Q |
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| T |
25803 |
tcatatgcatgttaaaacgcaagtgct-gacaccattatttatatagtctgaaagcatttcatttttacaccaaatgttcatgtatccagtctctcataa |
25901 |
T |
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| Q |
167 |
ttacgtaggcttgttcagcatccttgtcttcttccacagattcaggtcggtgggcaaatccatgacctctaccagggaatatcactactttggagccact |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25902 |
ttacgtaggcttgttcagcatccttgtcttcttccacagattcaggtcggtgggcaaatccatgacctctaccagggaatatcactactttggagccact |
26001 |
T |
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| Q |
267 |
atcaattgtagtctgaatattttttatttcacttacagcacaaattgggtcattgtcccctaaaataaacaagacgggaacttttacatcagaagcaaca |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26002 |
atcaattgtagtctgaatattttttatttcacttacagcacaaattgggtcattgtcccctaaaataaacaagacgggaacttttacatcagaagcaaca |
26101 |
T |
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| Q |
367 |
agcgaatctatccttgtaccataaaag |
393 |
Q |
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| T |
26102 |
agcgaatctatccttgtaccataaaag |
26128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 21352405 - 21352585
Alignment:
| Q |
67 |
tcatatgcatgttaaaacgcaagtgttagacaccattatttatatagtctgaaagcatttcatttttacaccaaatgttcatgtatccagtctctcataa |
166 |
Q |
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||||||||||||||| ||||||||||| || ||| ||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21352405 |
tcatatgcatgttaagacgcaagtgtt-gatacctttattcatatagtcttaaaacatttcatttttacaccaaatgttcaaatatccagtctctcataa |
21352503 |
T |
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| Q |
167 |
ttacgtaggcttgttcagcatcct--tgtcttcttccacagattcaggtcggtgggcaaatccatgacctctaccagggaat |
246 |
Q |
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|||| || |||||||||||||||| |||||| | || |||| | | ||||||||||||||| ||||||||| |||||||| |
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| T |
21352504 |
ttacataagcttgttcagcatcctcgcgtcttcgttcagagatccggatcggtgggcaaatccgtgacctctatcagggaat |
21352585 |
T |
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