View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_1 (Length: 854)
Name: NF1310_low_1
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 22 - 854
Target Start/End: Original strand, 410760 - 411584
Alignment:
| Q |
22 |
cagcaccacagaagcacaggttttgtttttctttaatatcctacttccatttgttttagctcacattatttcctgaccaagttgtttttcttaccaattt |
121 |
Q |
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| T |
410760 |
cagcaccaaagaagcacaggttt-gtttttctttaatatcctacttccatttgttttagctcacattatttccttaccaagttgtttttcttaccaattt |
410858 |
T |
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| Q |
122 |
tgactcaataggagggtgtggctattgaaatagcagaggctgttgttggtgcattgaatggtgaactttcagcaactgctgtcaatgctcctatggttgc |
221 |
Q |
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| T |
410859 |
tgactcaataggagggtgtggctattgaaatagcagaggctgttgttggtgcattgaatggtgaactttcagcaactgctgtcaatgctcctatggttgc |
410958 |
T |
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| Q |
222 |
tcctgaggtaaacaaaacaaccacattgtgacattattatgcttttctcgaataaagaccatagccagcctccacgaaaatcagaattgaattacaagta |
321 |
Q |
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| T |
410959 |
tcctgaggtaaacaaaacaacctcattgtgacattattatgcttttctcgaataaagaccatagccagcctccacgaaaatcagaattgaattacaagta |
411058 |
T |
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| Q |
322 |
gtttagacattggtcaaatttgtgagttgtgacatctatgattgatgtgcattgttcttctttttcttctattttatttctgtcataactgttggcaatt |
421 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411059 |
gtttagacattggtcaaatttgt-------gacatctatgattgatgtgcattgttcttctttttcttctattttatttctgtcataactgttggcaatt |
411151 |
T |
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| Q |
422 |
tcatcaggtattatcagaactggctccatatgttgtactagctgagaagctaggaaggttagctgtgcagttggtatctggaggaagtggaatccagtct |
521 |
Q |
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| T |
411152 |
tcatcaggtattatcagaactggctccatatgttgtgctagctgagaagctaggaaggttagctgtgcagttggtatccggaggaagtggaatccagtct |
411251 |
T |
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| Q |
522 |
gtaaaagtggtttaccgatcagccaggggtcccgatgacctagactccatacttcgtcgagccatgatcacaaaatgcatcattgaaccaatatcaaaca |
621 |
Q |
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| T |
411252 |
gtaaaagtggtttaccgatcagccaggggtcccgatgaccttgacactagacttcttcgagccatgatcacaaaaggcatcattgaaccaatatcaaaca |
411351 |
T |
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| Q |
622 |
caattgtcaaccttgtaaatgctgattacattgcgaagcaaaaaggccttcgcataagcgaggaaagagtagtggtcgattcgtctcctgagctacctgt |
721 |
Q |
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| T |
411352 |
caattgtcaaccttgtaaatgctgattacattgcgaagcaaaaaggccttcgcataagcgaggaaagagtagtggtcgattcgtctcctgaactacctgt |
411451 |
T |
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| Q |
722 |
tgagtcaatccagatacagatatccaatgtggagtccaaattcgcgagtgctgtatcagagactggtcagataagcattgatggaaaagtgaagtacggt |
821 |
Q |
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| T |
411452 |
tgagtcaatccagatacagatatccaatgtggagtccaaattcgcgagtgctgtatcagagactggtcagataagcattgatggaaaagtgaagtacggt |
411551 |
T |
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| Q |
822 |
acaccacaccttacatgtgtgggatcttttgct |
854 |
Q |
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| T |
411552 |
acaccacaccttacatgtgtgggatcttttgct |
411584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 48786060 - 48786108
Alignment:
| Q |
131 |
aggagggtgtggctattgaaatagcagaggctgttgttggtgcattgaa |
179 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
48786060 |
aggaaggtgtggctattgaaatagcagaagctgttgttggggctttgaa |
48786108 |
T |
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