View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_12 (Length: 412)

Name: NF1310_low_12
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_12
NF1310_low_12
[»] chr5 (3 HSPs)
chr5 (1-369)||(24400790-24401158)
chr5 (314-346)||(8297853-8297885)
chr5 (310-346)||(26405214-26405250)
[»] chr3 (2 HSPs)
chr3 (310-346)||(4171123-4171159)
chr3 (310-346)||(50518755-50518791)
[»] chr1 (2 HSPs)
chr1 (311-346)||(7451927-7451962)
chr1 (311-346)||(31290687-31290722)
[»] chr7 (2 HSPs)
chr7 (309-346)||(33719343-33719380)
chr7 (310-346)||(6726085-6726121)
[»] scaffold0050 (1 HSPs)
scaffold0050 (310-346)||(37086-37122)
[»] chr6 (2 HSPs)
chr6 (310-346)||(3880278-3880314)
chr6 (310-346)||(20701463-20701499)
[»] chr4 (1 HSPs)
chr4 (310-346)||(42719535-42719571)
[»] chr2 (1 HSPs)
chr2 (310-346)||(13337629-13337665)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 24400790 - 24401158
Alignment:
Q  1 acagcttgaatctgaatgaacacatgaa-cataaacctag-aactcaagtgtatttggaggagaggaaaggattgcagaaaaatgcaaatgagagagtat 98  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24400790 acagcttgaatctgaatgaacacaggaaacataaacctaggaactca-gtgtatttggaggagagaaaaggattgcagaaaaatgcaaatgagagagtat 24400888  T
Q  99 gtatatgtgtgtaccatcttgtgttactagcaattattatatatatattggtaagtgagtgttttgttgaaaaacaaaggaagggtagtgtgagtggttg 198  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  24400889 gtatatgtttgtaccgtcttgtgttactagcaattattatatatatattggtaagtgagtgatttgttgaaaaacaaaggaagggtagtgtaagtggttg 24400988  T
Q  199 ttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcataagttggtaaatatcctgataaca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24400989 ttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcataagttggtaaatat-ctgataaca 24401087  T
Q  299 ataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcctgatgaaatcatgatatt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24401088 ataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcttgatgaaatcatgatatt 24401158  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 8297853 - 8297885
Alignment:
Q  314 tttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||| ||||||||||||||||||    
T  8297853 tttgtattctcagtttcaccggtctctgttcgt 8297885  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 26405250 - 26405214
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||||||| |||||||||| |||||||    
T  26405250 tttgtttgtattctcagtttcaccggtctttgttcgt 26405214  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 4171123 - 4171159
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4171123 tttgtttgtattctcagtttcaccggtctctgttcgt 4171159  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 50518791 - 50518755
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50518791 tttgtttgtattctcagtttcaccagtctctgttcgt 50518755  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 7451962 - 7451927
Alignment:
Q  311 ttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgt 7451927  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 31290722 - 31290687
Alignment:
Q  311 ttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31290722 ttgtttgtattctcagtctcaccagtctctgttcgt 31290687  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 33719343 - 33719380
Alignment:
Q  309 gtttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  33719343 gtttgtttgtattctcagtttcaccgatctctgttcgt 33719380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 6726121 - 6726085
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||||||| |||||| |||||||||||    
T  6726121 tttgtttgtattctcagtttcaccgatctctgttcgt 6726085  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 37086 - 37122
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  37086 tttgtttgtattatcagtttcaccggtctctgttcgt 37122  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 3880314 - 3880278
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  3880314 tttgtttgtattttcagtttcaccggtctctgttcgt 3880278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 20701499 - 20701463
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||||||| |||||| |||||||||||    
T  20701499 tttgtttgtattctcagtttcaccgatctctgttcgt 20701463  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 42719535 - 42719571
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    |||||||||||||||||| |||||||||||| |||||    
T  42719535 tttgtttgtattctcagtttcaccggtctctattcgt 42719571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 13337629 - 13337665
Alignment:
Q  310 tttgtttgtattctcagtctcaccggtctctgttcgt 346  Q
    ||||||||||||||| || ||||||||||||||||||    
T  13337629 tttgtttgtattctctgtttcaccggtctctgttcgt 13337665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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