View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_13 (Length: 366)

Name: NF1310_low_13
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_13
NF1310_low_13
[»] chr2 (20 HSPs)
chr2 (30-356)||(30824069-30824390)
chr2 (245-328)||(41073012-41073095)
chr2 (246-313)||(373228-373295)
chr2 (277-330)||(373294-373347)
chr2 (285-329)||(17286686-17286730)
chr2 (245-330)||(28716602-28716683)
chr2 (263-330)||(19908697-19908764)
chr2 (245-303)||(374947-375005)
chr2 (245-303)||(29188607-29188665)
chr2 (254-335)||(2061289-2061370)
chr2 (251-319)||(43483394-43483462)
chr2 (254-325)||(13238603-13238674)
chr2 (245-303)||(3354826-3354884)
chr2 (245-303)||(8988810-8988867)
chr2 (245-303)||(23459909-23459967)
chr2 (259-325)||(28564813-28564879)
chr2 (245-287)||(23464254-23464298)
chr2 (254-303)||(45625144-45625193)
chr2 (246-302)||(2805285-2805340)
chr2 (262-330)||(38397000-38397068)
[»] chr3 (28 HSPs)
chr3 (263-333)||(28229478-28229548)
chr3 (245-330)||(33979861-33979946)
chr3 (248-329)||(778895-778976)
chr3 (245-330)||(32577449-32577533)
chr3 (245-330)||(48950537-48950622)
chr3 (245-329)||(20485687-20485771)
chr3 (263-330)||(29586254-29586321)
chr3 (245-327)||(3009169-3009251)
chr3 (245-322)||(33338234-33338310)
chr3 (263-327)||(33632743-33632807)
chr3 (267-330)||(44637858-44637921)
chr3 (262-324)||(20485808-20485870)
chr3 (245-303)||(31523731-31523789)
chr3 (262-330)||(550906-550974)
chr3 (254-303)||(43720029-43720078)
chr3 (245-330)||(54911781-54911866)
chr3 (262-322)||(48084744-48084804)
chr3 (246-297)||(4699016-4699067)
chr3 (254-328)||(19830514-19830589)
chr3 (252-331)||(36354343-36354422)
chr3 (245-303)||(27959061-27959119)
chr3 (254-328)||(40851692-40851766)
chr3 (245-303)||(42613034-42613092)
chr3 (245-303)||(49679333-49679391)
chr3 (264-330)||(50463404-50463470)
chr3 (254-303)||(27033595-27033644)
chr3 (254-303)||(34373667-34373716)
chr3 (265-297)||(2310261-2310293)
[»] chr7 (26 HSPs)
chr7 (246-330)||(27387002-27387086)
chr7 (263-330)||(41271789-41271856)
chr7 (245-314)||(30760316-30760385)
chr7 (245-329)||(20399980-20400064)
chr7 (263-331)||(32915875-32915943)
chr7 (280-331)||(30584334-30584385)
chr7 (248-322)||(23264128-23264202)
chr7 (245-330)||(31322118-31322203)
chr7 (249-330)||(37134249-37134330)
chr7 (245-305)||(30588487-30588547)
chr7 (262-322)||(47500373-47500433)
chr7 (264-331)||(8149536-8149603)
chr7 (245-303)||(19889097-19889155)
chr7 (254-303)||(4888411-4888460)
chr7 (272-325)||(18064494-18064547)
chr7 (245-318)||(18118563-18118636)
chr7 (254-303)||(45260509-45260558)
chr7 (263-335)||(5463994-5464066)
chr7 (264-330)||(8607958-8608024)
chr7 (259-330)||(21945787-21945858)
chr7 (263-330)||(47270484-47270550)
chr7 (245-303)||(32916123-32916181)
chr7 (254-303)||(7362512-7362561)
chr7 (254-303)||(9559136-9559185)
chr7 (254-303)||(21151096-21151145)
chr7 (263-331)||(40023346-40023414)
[»] chr4 (18 HSPs)
chr4 (245-330)||(38865206-38865289)
chr4 (268-330)||(25442271-25442333)
chr4 (245-319)||(29079394-29079470)
chr4 (245-331)||(4404216-4404302)
chr4 (245-303)||(37002314-37002372)
chr4 (254-327)||(38079802-38079875)
chr4 (245-300)||(5524404-5524459)
chr4 (254-328)||(23610561-23610635)
chr4 (254-328)||(12153090-12153164)
chr4 (254-332)||(33841886-33841964)
chr4 (254-303)||(3952252-3952301)
chr4 (254-303)||(12241490-12241539)
chr4 (262-303)||(12312593-12312634)
chr4 (246-299)||(32150125-32150178)
chr4 (245-302)||(47834536-47834593)
chr4 (263-311)||(3512435-3512483)
chr4 (274-330)||(5815403-5815459)
chr4 (263-303)||(56269158-56269198)
[»] chr5 (21 HSPs)
chr5 (245-331)||(38283705-38283789)
chr5 (245-303)||(2582420-2582478)
chr5 (245-329)||(35650246-35650330)
chr5 (254-327)||(39902335-39902408)
chr5 (245-329)||(23253815-23253899)
chr5 (245-329)||(43222054-43222138)
chr5 (245-308)||(43309057-43309120)
chr5 (247-305)||(4161251-4161309)
chr5 (254-328)||(13032038-13032112)
chr5 (245-330)||(7840355-7840440)
chr5 (245-330)||(26452485-26452570)
chr5 (267-330)||(14733482-14733546)
chr5 (245-329)||(41660034-41660118)
chr5 (267-330)||(10173865-10173928)
chr5 (263-325)||(128139-128201)
chr5 (254-328)||(11775711-11775785)
chr5 (262-324)||(23253716-23253778)
chr5 (264-330)||(29340914-29340980)
chr5 (277-330)||(4423047-4423100)
chr5 (245-330)||(9124989-9125073)
chr5 (245-298)||(36290561-36290614)
[»] chr1 (17 HSPs)
chr1 (245-328)||(36700884-36700967)
chr1 (245-328)||(36716988-36717071)
chr1 (263-331)||(5047471-5047539)
chr1 (246-334)||(5446654-5446742)
chr1 (263-335)||(32887871-32887943)
chr1 (245-331)||(1358454-1358540)
chr1 (245-302)||(24413345-24413402)
chr1 (263-330)||(30210801-30210868)
chr1 (254-328)||(12380992-12381066)
chr1 (254-328)||(12385059-12385133)
chr1 (265-323)||(42720585-42720643)
chr1 (254-328)||(45977941-45978015)
chr1 (254-328)||(50484305-50484379)
chr1 (254-303)||(50294145-50294194)
chr1 (259-330)||(1609625-1609696)
chr1 (276-324)||(22536726-22536774)
chr1 (302-330)||(39305372-39305400)
[»] chr8 (13 HSPs)
chr8 (245-330)||(21492700-21492786)
chr8 (245-330)||(24557359-24557444)
chr8 (245-323)||(13035080-13035157)
chr8 (245-331)||(24241501-24241587)
chr8 (245-330)||(1809755-1809839)
chr8 (245-305)||(1937218-1937278)
chr8 (244-330)||(1098466-1098550)
chr8 (245-332)||(2836226-2836312)
chr8 (262-333)||(5033020-5033091)
chr8 (267-330)||(15901377-15901440)
chr8 (245-298)||(34746436-34746489)
chr8 (276-332)||(2838762-2838818)
chr8 (276-332)||(2843449-2843505)
[»] scaffold0012 (1 HSPs)
scaffold0012 (254-334)||(207976-208056)
[»] chr6 (9 HSPs)
chr6 (263-330)||(30460994-30461061)
chr6 (245-302)||(2142356-2142413)
chr6 (245-329)||(2614493-2614577)
chr6 (276-335)||(27095927-27095986)
chr6 (254-328)||(1249228-1249302)
chr6 (245-330)||(2165551-2165636)
chr6 (245-330)||(2177184-2177269)
chr6 (254-303)||(7162028-7162077)
chr6 (245-298)||(24484838-24484891)
[»] scaffold0171 (1 HSPs)
scaffold0171 (245-303)||(17369-17427)
[»] scaffold0712 (1 HSPs)
scaffold0712 (268-305)||(3140-3177)
[»] scaffold0709 (1 HSPs)
scaffold0709 (268-305)||(3160-3197)
[»] scaffold0286 (1 HSPs)
scaffold0286 (245-330)||(16773-16858)
[»] scaffold0252 (1 HSPs)
scaffold0252 (254-331)||(10556-10633)
[»] scaffold0126 (1 HSPs)
scaffold0126 (254-326)||(22524-22596)
[»] scaffold0006 (1 HSPs)
scaffold0006 (254-303)||(73922-73971)
[»] scaffold0456 (1 HSPs)
scaffold0456 (254-302)||(13641-13689)
[»] scaffold0121 (1 HSPs)
scaffold0121 (263-335)||(29651-29723)
[»] scaffold0008 (1 HSPs)
scaffold0008 (254-330)||(9280-9356)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 30824390 - 30824069
Alignment:
Q  30 attggagatcctggtatgaaaagagatggcttgagagttgctattgagtcatggaatcaatgcaatgaggttggaaaagaagcaccaaacatgggaagtc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824390 attggagatcctggtatgaaaagagatggcttgagagttgctattgagtcatggaatcaatgcaatgaggttggaaaagaagcaccaaacatgggaagtc 30824291  T
Q  130 caagaatggctgattgctttgatgtcaaataccgtaaacatcaaagtaagtgaccatttaaaatatatagtttttaattataggtttattatttgcattg 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||| ||   ||||||||||||    
T  30824290 caagaatggctgattgctttgatgtcaaatacggtaaacatcaaagtaagtgaccatttaaaa--tatagtttttaattataagt---ttatttgcattg 30824196  T
Q  230 tttccttgagtattgcattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30824195 tttatttgagtattgcattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggaaaggatcttaact 30824096  T
Q  330 cattttgaagcggtttaggtccctatg 356  Q
    |||||||||||||||||||||||||||    
T  30824095 cattttgaagcggtttaggtccctatg 30824069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 41073012 - 41073095
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  41073012 cattaattatttttaagattttttgtgtctttatctctctaaatgaaagaaatggagaagagattaaacggagagggtcttaac 41073095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 373228 - 373295
Alignment:
Q  246 attaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaat 313  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  373228 attaattatttttaagattttttgtatctttatctttctaaatggaagaaatggagaagagtttaaat 373295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 373294 - 373347
Alignment:
Q  277 atctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  373294 atctttctaaatggaagaaatgaagaagagtttaaatggagatgatcttaactc 373347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 17286686 - 17286730
Alignment:
Q  285 aaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  17286686 aaatggaagaaatggagaagagtttaaatggagaggatattaact 17286730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 28716602 - 28716683
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||||| |||    |||||| | ||||| |||||| |||||||||||||||  |||||||||| ||||||||||||    
T  28716602 cattaattatttttaaaatt----gtgtctttctctctttaaatgaaagaaatggagaagatgttaaatggaggggatcttaactc 28716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 19908764 - 19908697
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||| ||| |||||||||||||||||||| |||||| |||  | | ||||||||||||||||||||||    
T  19908764 ttttgtgtatctatatctctctaaatggatgaaatgaagagaataataaatggagaggatcttaactc 19908697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 375005 - 374947
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||    
T  375005 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaa 374947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 29188665 - 29188607
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||    
T  29188665 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaa 29188607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 2061370 - 2061289
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcatttt 335  Q
    |||| |||||||| || |||| |||||||| ||||||||||||| ||||    | |||||||||||||||||||||| ||||    
T  2061370 ttttcaagattttatgcgtctttatctctccaaatggaagaaattgagatactaataaatggagaggatcttaactcgtttt 2061289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 43483394 - 43483462
Alignment:
Q  251 ttatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagag 319  Q
    ||||||||||  ||| |||| | | ||||||||||||| |||||||| ||||||| |||||||||||||    
T  43483394 ttatttttaaattttattgtatttttatctctctaaatagaagaaattgagaagatattaaatggagag 43483462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 13238674 - 13238603
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatctt 325  Q
    |||| |||||||| ||||||| |||||||| |||| |||||||| |||||  |  |||||||||||||||||    
T  13238674 ttttcaagattttatgtgtctttatctctccaaattgaagaaattgagaaacgcataaatggagaggatctt 13238603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 3354826 - 3354884
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||| ||| ||||||||||    
T  3354826 cattaattattttttactttttatgtgtctttatctctctaaatagaacaaatggagaa 3354884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 8988867 - 8988810
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||    
T  8988867 cattaattattttttat-ttttatgtgtctttatctctctaaatggaacaaatggagaa 8988810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 23459909 - 23459967
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||| ||||||| ||||||||||    
T  23459909 cattaattattttttactttttatgtgtctttatctctctgaatggaacaaatggagaa 23459967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 28564879 - 28564813
Alignment:
Q  259 aagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatctt 325  Q
    |||||||| ||||||| |||||||| |||| ||||||||||||||     |||||||||||||||||    
T  28564879 aagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatctt 28564813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 23464254 - 23464298
Alignment:
Q  245 cattaattatttttaagattttttgtgtctat--atctctctaaa 287  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||    
T  23464254 cattaattatttttaagattttttgggtctataaatctctctaaa 23464298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 45625144 - 45625193
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| ||||||||  |||||| ||||||||||||| ||||||||||||||    
T  45625144 ttttcaagattttacgtgtctttatctctctaaattgaagaaatggagaa 45625193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 2805285 - 2805340
Alignment:
Q  246 attaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggaga 302  Q
    |||||||||||||||  || ||||||||| ||| ||| |||||||||||||||||||    
T  2805285 attaattatttttaat-ttctttgtgtctttatttctttaaatggaagaaatggaga 2805340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 38397068 - 38397000
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||| |||||||||||||| |||| || ||||||||||  | | ||||||||||  ||||||||||    
T  38397068 attttttttgtctatatctctccaaattgatgaaatggagagaaaaataaatggagaatatcttaactc 38397000  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 28229478 - 28229548
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcatt 333  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28229478 ttttttgtgtctatatctctctaaatggaagaaatggacaagagattaaatggagaggatcttaactcatt 28229548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 33979946 - 33979861
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||||||||||| |||| | ||||||||||||||| ||| ||||||| ||||||||||||||||| ||| |||||||    
T  33979946 cattaattatttttaagatttattgtatatatatctctctaaatagaataaatggataagagattaaatggagaagatattaactc 33979861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 778895 - 778976
Alignment:
Q  248 taattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||||||||  ||||| || ||||||||||||||||||||||    
T  778895 taattatttttaagattttttgtttctttatctctacaaatggaagaaagagagaaaagtttaaatggagaggatcttaact 778976  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 32577533 - 32577449
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||| |||| ||||||||| |||||| |||||||| |||| ||||||||||||||||| ||||||||| |||||| ||||||    
T  32577533 cattaatttttttcaagattttt-gtgtctttatctctccaaatagaagaaatggagaagagtttaaatggaaaggatcctaactc 32577449  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 48950622 - 48950537
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| |||||||||||| | | ||||| | |||||||| ||||| |||||||| ||||||||||||||||| |||||    
T  48950622 cattaattattttcaagattttttgtatttttatctttgtaaatggatgaaatagagaagagtttaaatggagaggatctcaactc 48950537  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 20485771 - 20485687
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    |||||||||||||  |||  ||||||||||||||||||| |||||| | |||||||| | |  ||||||||||||||||||||||    
T  20485771 cattaattattttctagaacttttgtgtctatatctctccaaatggtaaaaatggaggaaaatttaaatggagaggatcttaact 20485687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 29586321 - 29586254
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||| |||||||||||||||| ||||||||||  | | |||||||||| |||||||||||    
T  29586321 ttttttgtgtctttatctctctaaatggatgaaatggagagaataataaatggagatgatcttaactc 29586254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 3009251 - 3009169
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaa 327  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||     |||||||||||||||||||    
T  3009251 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatcttaa 3009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 33338234 - 33338310
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggat 322  Q
    |||||| |||||| |||||||| ||||||| |||||||  ||| |||||||||||| ||||| |||||||||||||||    
T  33338234 cattaactattttcaagatttt-tgtgtctttatctcttcaaacggaagaaatggaaaagagtttaaatggagaggat 33338310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 33632807 - 33632743
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaa 327  Q
    |||||||||| |||||||||| ||||||| ||||||||||  | | |||||||||||||||||||    
T  33632807 ttttttgtgtttatatctctccaaatggatgaaatggagagaataataaatggagaggatcttaa 33632743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 44637921 - 44637858
Alignment:
Q  267 ttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||| ||||||| ||||||||||||||||||||||    ||||| |||||||||||||||    
T  44637921 ttgtgtctctatctctttaaatggaagaaatggagaagatcacaaatgaagaggatcttaactc 44637858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 20485808 - 20485870
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatct 324  Q
    ||||| ||||| |||||||||| |||||| |||||||||||| |  |||||||||||||||||    
T  20485808 attttatgtgtttatatctctccaaatggtagaaatggagaaaaatttaaatggagaggatct 20485870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 31523731 - 31523789
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||    
T  31523731 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaa 31523789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 550906 - 550974
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagaga-ttaaatggagaggatcttaactc 330  Q
    ||||| ||| ||| |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||    
T  550906 attttatgtatctttatctctccaaatggaagaaatggagaa-agacataaatggagaggatcttaactc 550974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 43720029 - 43720078
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    ||||||||||||| ||||||| |||||||| |||| ||||||||||||||    
T  43720029 tttttaagattttatgtgtctttatctctccaaattgaagaaatggagaa 43720078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 54911866 - 54911781
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| |||| ||||||||| ||||| |||  |||||| ||||||||| || |  | |||||||||| ||||||||||    
T  54911866 cattaattattttcaagaatttttgtgtttatatatcttcaaatggtagaaatggacaaaaattaaaatggagagaatcttaactc 54911781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 48084804 - 48084744
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggat 322  Q
    ||||| |||||||||||||||| |||||| |||||||||||||    ||||||||||||||    
T  48084804 attttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatggagaggat 48084744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 4699016 - 4699067
Alignment:
Q  246 attaattatttttaagattttttgtgtctatatctctctaaatggaagaaat 297  Q
    |||||||||||| ||  || ||||||||| ||||||||||||||||||||||    
T  4699016 attaattattttcaaatttatttgtgtctttatctctctaaatggaagaaat 4699067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 19830514 - 19830589
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatgg-agaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| |||| |||||||||| | || | || |||||||||||||||||||    
T  19830514 ttttaaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaaatggagaggatcttaac 19830589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 36354343 - 36354422
Alignment:
Q  252 tatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    |||||| |||||||||||||||| ||||| ||||||| || ||||| ||||  |   |||||||||||||||| ||||||    
T  36354343 tattttcaagattttttgtgtctttatctttctaaattgaggaaattgagagaattgtaaatggagaggatctcaactca 36354422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 27959119 - 27959061
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||| | ||||||||||||||||| ||||||||||    
T  27959119 cattaattattttttactttttatgtgtatttatctctctaaatggaacaaatggagaa 27959061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 40851766 - 40851692
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| ||||    
T  40851766 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatcctaac 40851692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 42613092 - 42613034
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||| ||| ||||||||||    
T  42613092 cattaattattttttactttttatgtgtctttatctctctaaatagaacaaatggagaa 42613034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 49679333 - 49679391
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| |||||||||||||| || ||||||||||    
T  49679333 cattaattattttttactttttatgtgtctttatctctctaaatgaaacaaatggagaa 49679391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 50463404 - 50463470
Alignment:
Q  264 tttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||||||||  ||||||| | || |||||  | | ||||||||||||||||||||||    
T  50463404 tttttgtgtctatatctctacaaatggatgtaacggagagaataataaatggagaggatcttaactc 50463470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 27033644 - 27033595
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  27033644 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 27033595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 34373667 - 34373716
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||||||| ||| |||||||| |||| ||||||||||||||    
T  34373667 ttttcaagattttttgtctctttatctctccaaattgaagaaatggagaa 34373716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 2310293 - 2310261
Alignment:
Q  265 ttttgtgtctatatctctctaaatggaagaaat 297  Q
    |||||||||| ||||||||||||||||||||||    
T  2310293 ttttgtgtctttatctctctaaatggaagaaat 2310261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 27387002 - 27387086
Alignment:
Q  246 attaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||| |||||||||||||||||||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||    
T  27387002 attaattattttcaagattttttgtgtctatatctttccaaatcgaataaatgaagaagagattaaatggagaggatcttaactc 27387086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 41271856 - 41271789
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  41271856 ttttttttgtctttatctctctaaatggaagaaatggagaagataaaaaatggagaggatcttaactc 41271789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 30760316 - 30760385
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatg 314  Q
    |||||||||||||||||||||||| ||||| |||||||  ||||| |||||||||||||||| |||||||    
T  30760316 cattaattatttttaagattttttatgtctttatctctacaaatgaaagaaatggagaagagtttaaatg 30760385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 20400064 - 20399980
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    |||||||||||||||||||||||| ||||| ||||| | ||||| ||||||||||| || |  ||||||||||| ||| ||||||    
T  20400064 cattaattatttttaagattttttatgtctttatctgtttaaatagaagaaatggaaaataatttaaatggagatgatattaact 20399980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 32915943 - 32915875
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    |||||||||||| |||||||| |||||||||||||||||||||   ||||||| |||||||||| ||||    
T  32915943 ttttttgtgtctttatctctccaaatggaagaaatggagaagaacataaatggggaggatcttagctca 32915875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 30584385 - 30584334
Alignment:
Q  280 tctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  30584385 tctccaaatggaagaaattgagaagagtttaaatggagaggatcttaactca 30584334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 23264128 - 23264202
Alignment:
Q  248 taattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggat 322  Q
    ||||||||||||||||||||||| ||| ||| |||  |||| ||| ||||| ||||||| |||||||||||||||    
T  23264128 taattatttttaagattttttgtatctttatttcttcaaatagaataaatgcagaagagtttaaatggagaggat 23264202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 31322118 - 31322203
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| | |||||||||||| | |||| ||| |||||||||||||| |||||| |  ||||| ||||||| |||||||    
T  31322118 cattaattattttaaggattttttgtgtttttatcactccaaatggaagaaatgaagaagataaaaaatgaagaggattttaactc 31322203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 37134330 - 37134249
Alignment:
Q  249 aattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||| |||||||||| || ||| ||||||||| |||||||| |||||||  ||||||| | || ||||||||||    
T  37134330 aattatttttaaaattttttgtgcctttatatctctaaatagaagaaatagagaagaatttaaatgaatagcatcttaactc 37134249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 30588547 - 30588487
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaaga 305  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||||    
T  30588547 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaaga 30588487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 47500373 - 47500433
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggat 322  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    ||||||||||||||    
T  47500373 attttgtgtgtctatatctctctaaatggtagaaatggagaaggacataaatggagaggat 47500433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 8149603 - 8149536
Alignment:
Q  264 tttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    ||||||||||| |||||||| |||||| |||||| |||| || | ||||| |||||||||||||||||    
T  8149603 tttttgtgtctttatctctccaaatggtagaaatagagaggataataaattgagaggatcttaactca 8149536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 19889097 - 19889155
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||    
T  19889097 cattaattattttttactttttatgtgtctttatctctctaaatggaataaatggagaa 19889155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 4888460 - 4888411
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  4888460 tttttaagattttatgtgtctttatctctccaaatggaagaaattgagaa 4888411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 18064547 - 18064494
Alignment:
Q  272 tctatatctctctaaatggaagaaatggagaagagattaaatggagaggatctt 325  Q
    ||||||||||||||||| |||||||||||||||  |  ||||||||||||||||    
T  18064547 tctatatctctctaaatagaagaaatggagaaggtacaaaatggagaggatctt 18064494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 18118563 - 18118636
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggaga 318  Q
    ||||||||||||| |||||||||| | ||| ||||| | ||||| |||||||||||||| |  |||||||||||    
T  18118563 cattaattattttcaagattttttatatctttatctatttaaatagaagaaatggagaataatttaaatggaga 18118636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 45260509 - 45260558
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    ||||||||||||| ||||||| |||||||| |||| ||||||||||||||    
T  45260509 tttttaagattttatgtgtctttatctctccaaattgaagaaatggagaa 45260558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 5463994 - 5464066
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcatttt 335  Q
    |||| |||||||||||||||| ||||| | ||||||||||  | | ||||||||||| |||||||||| ||||    
T  5463994 ttttgtgtgtctatatctctccaaatgaatgaaatggagagaataataaatggagagaatcttaactcttttt 5464066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 8608024 - 8607958
Alignment:
Q  264 tttttgtgtctatatctctctaaatggaagaaatggagaagagat-taaatggagaggatcttaactc 330  Q
    ||||||||||| ||||| || |||||||| |||||||||| || | ||||||||||||||||||||||    
T  8608024 tttttgtgtctctatctttccaaatggaacaaatggagaa-agttataaatggagaggatcttaactc 8607958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 21945787 - 21945858
Alignment:
Q  259 aagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||| |||||||||||||||||||| |||| | ||||||| |||| |  |||||||||||  ||||||||||    
T  21945787 aagaatttttgtgtctatatctctccaaatagtagaaatgaagaaaaatttaaatggagaatatcttaactc 21945858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 47270550 - 47270484
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||| ||||||||||||| ||||| |||||||||||| || |  ||||||||| |||||||||||    
T  47270550 ttttttgagtctatatctctccaaatg-aagaaatggagaggatacaaaatggagaagatcttaactc 47270484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 32916181 - 32916123
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||| | |||||||| |||||||||||||||||||    
T  32916181 cattaattattttttattttttgtgtgtatttatctctcaaaatggaagaaatggagaa 32916123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 7362561 - 7362512
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  7362561 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 7362512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 9559136 - 9559185
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||| |||||    
T  9559136 ttttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaa 9559185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 21151145 - 21151096
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  21151145 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 21151096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 40023346 - 40023414
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    ||||||| || ||||||||||||||||||||||||| ||| |  |  ||||||| |||||||| |||||    
T  40023346 ttttttgagtttatatctctctaaatggaagaaatgaagagggtacaaaatggaaaggatcttgactca 40023414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 38865289 - 38865206
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| ||||||||  ||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||||    
T  38865289 cattaattattttcaagatttt--gtgtctatatctctccaaatgaaataaatggagaagagattaaatggagatgatcttaactc 38865206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 25442271 - 25442333
Alignment:
Q  268 tgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||| |||||||| ||||||||||||||||||||    ||||||||||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggagaggatcttaactc 25442333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 29079394 - 29079470
Alignment:
Q  245 cattaattatttttaagattttttgtgt--ctatatctctctaaatggaagaaatggagaagagattaaatggagag 319  Q
    |||||||||||||||||||||||| |||  || ||| |||| ||||||||||||| || ||||||||||||| ||||    
T  29079394 cattaattatttttaagattttttttgtagctttatttctccaaatggaagaaattgaaaagagattaaatgaagag 29079470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 4404302 - 4404216
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    ||||||||| |||| |  |||| ||||||| ||||| |||||||||| |||||||||| |  | ||||||||||||||||| |||||    
T  4404302 cattaattaatttttactttttatgtgtctttatctttctaaatggaggaaatggagagggaaataaatggagaggatcttgactca 4404216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 37002314 - 37002372
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||    
T  37002314 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatggagaa 37002372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 38079802 - 38079875
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaa 327  Q
    |||| |||||||| ||||||| |||||||| |||| ||| ||||||||||  |  |||||||||||||||||||    
T  38079802 ttttcaagattttatgtgtctttatctctccaaattgaaaaaatggagaaacgcataaatggagaggatcttaa 38079875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 5524459 - 5524404
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatgga 300  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| |||||||    
T  5524459 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatgga 5524404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 23610635 - 23610561
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagat-taaatggagaggatcttaac 328  Q
    |||| |||||||| ||| ||| |||||||| |||| |||||||||||||| | || ||||||||||||||||||||    
T  23610635 ttttcaagattttatgtatctttatctctccaaattgaagaaatggagaa-acatataaatggagaggatcttaac 23610561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 12153164 - 12153090
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| ||||    
T  12153164 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12153090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 33841886 - 33841964
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcat 332  Q
    |||| |||||||||||||||| ||||| || ||||||| ||||||||||  |   |||||| ||||||||| |||||||    
T  33841886 ttttcaagattttttgtgtctttatctttccaaatggaggaaatggagagaattgtaaatgaagaggatctcaactcat 33841964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 3952252 - 3952301
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  3952252 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 3952301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 12241490 - 12241539
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  12241490 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 12241539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 12312593 - 12312634
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||    
T  12312593 attttatgtgtctttatctctctaaattgaagaaatggagaa 12312634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 32150125 - 32150178
Alignment:
Q  246 attaattatttttaagattttttgtgtctatatctctctaaatggaagaaatgg 299  Q
    |||||||||||||||  || ||||||||| |||||||  |||||||||||||||    
T  32150125 attaattatttttaaagttctttgtgtctttatctcttcaaatggaagaaatgg 32150178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 47834593 - 47834536
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggaga 302  Q
    |||||||||||||| |  |||| ||||||| ||||| |||||||||| ||||||||||    
T  47834593 cattaattattttttactttttatgtgtctttatctttctaaatggaggaaatggaga 47834536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 3512435 - 3512483
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaa 311  Q
    |||||||||| ||||||| |  ||||| |||||||||||||||||||||    
T  3512435 ttttttgtgtttatatcttttaaaatgaaagaaatggagaagagattaa 3512483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 5815403 - 5815459
Alignment:
Q  274 tatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||| |||||||||||||||||||   |  |||||||||||||||| ||||    
T  5815403 tatatctctccaaatggaagaaatggagaatgtacaaaatggagaggatcttgactc 5815459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 56269158 - 56269198
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| ||||||| ||||||||||||||||| ||||||||||    
T  56269158 ttttatgtgtctttatctctctaaatggaacaaatggagaa 56269198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 38283789 - 38283705
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    |||||||||||||||||| |||  |||||||||||||||||||||| |||||| || || |  ||||||||||||||||||||||||    
T  38283789 cattaattatttttaagaattt--gtgtctatatctctctaaatggtagaaatagataaaaatttaaatggagaggatcttaactca 38283705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 2582420 - 2582478
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  2582420 cattaattatttttaagattttttgtgtctatatctccccaaatgaaagaaatggagaa 2582478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 35650330 - 35650246
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    ||||||||||||||||  |||||| ||| |||||||||  ||||| ||||||||||| ||||| |||||||| ||||||||||||    
T  35650330 cattaattatttttaaatttttttatgtttatatctcttcaaatgaaagaaatggaggagagactaaatggataggatcttaact 35650246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 39902408 - 39902335
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaa 327  Q
    ||||||||||||| ||||||| |||||||| |||| ||||||||||||||     |||||||||||||||||||    
T  39902408 tttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaa 39902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 23253815 - 23253899
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    ||||||||||||| ||||  |||||||||||||||| || |||||| | |||| ||| | |  ||||||||||||||||||||||    
T  23253815 cattaattattttcaagaacttttgtgtctatatctatccaaatggtaaaaatagaggaaaatttaaatggagaggatcttaact 23253899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 43222138 - 43222054
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    ||||||||||||| || ||||| ||||||| ||||||||| |||| || |||||||| |||| |||||| ||||| ||| |||||    
T  43222138 cattaattattttcaaaattttatgtgtctttatctctctgaatgaaataaatggagcagagtttaaatagagagaatcctaact 43222054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 43309120 - 43309057
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagat 308  Q
    |||||||| |||| |||||||| ||||||| |||||||  |||| |||||||||||||||||||    
T  43309120 cattaatttttttcaagattttatgtgtctttatctcttcaaattgaagaaatggagaagagat 43309057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 4161251 - 4161309
Alignment:
Q  247 ttaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaaga 305  Q
    ||||||||||||||  ||| |||||||| ||||||| ||||| ||||||||||||||||    
T  4161251 ttaattatttttaaattttattgtgtctttatctctttaaatagaagaaatggagaaga 4161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 13032112 - 13032038
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    ||||||||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| ||||    
T  13032112 tttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 13032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 7840440 - 7840355
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||| ||||||| ||||| ||||| ||||| ||  | | |||||||||||||| || |||||||| || |||||||||||    
T  7840440 cattaattatatttaagagtttttatgtctttatctatcctatttgaagaaatggagaatagtttaaatggtgatgatcttaactc 7840355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 26452570 - 26452485
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||||||| | | |||||| |||||||||| ||||| || ||| |||||||| |  |||| |||||||| |||||||    
T  26452570 cattaattatttttaagttatattgtgtttatatctctcaaaatgaaaaaaagggagaagatacaaaatagagaggattttaactc 26452485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 14733546 - 14733482
Alignment:
Q  267 ttgtgtctatatctctctaaatggaagaaatggag-aagagattaaatggagaggatcttaactc 330  Q
    |||||||| ||||| |||||||||||||||||||| || | |||||||| |||||||||| ||||    
T  14733546 ttgtgtctttatctttctaaatggaagaaatggagaaaaaaattaaatgaagaggatcttgactc 14733482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 41660118 - 41660034
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    |||||||||||||| |  | || ||||||| |||||||||||||||| |||||||||| |  | |||||||||| ||| ||||||    
T  41660118 cattaattattttttacttcttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttaact 41660034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 10173928 - 10173865
Alignment:
Q  267 ttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||| |||||||| ||||| | ||||||||||||    ||||||||||||||||||||||    
T  10173928 ttgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggatcttaactc 10173865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 128201 - 128139
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatctt 325  Q
    |||||||||| | |||||||||||||||| ||||||||||  |   |||||||||||||||||    
T  128201 ttttttgtgtttttatctctctaaatggaggaaatggagacaattgtaaatggagaggatctt 128139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 11775785 - 11775711
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||| | |||||||| |||| ||||||||||||||     ||||||||||||||||||||    
T  11775785 ttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaac 11775711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 23253778 - 23253716
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatct 324  Q
    ||||| ||||||| |||||||| |||||| |||||||||||| |  ||||||||| |||||||    
T  23253778 attttatgtgtctctatctctccaaatggtagaaatggagaaaaatttaaatggataggatct 23253716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 29340980 - 29340914
Alignment:
Q  264 tttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||| |||||||||||| ||||| | ||||||||||  | | |||||||||| |||||||||||    
T  29340980 tttttgtctctatatctctccaaatgaatgaaatggagagaataataaatggagaagatcttaactc 29340914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 4423100 - 4423047
Alignment:
Q  277 atctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| | |||||| ||| || | ||||||||||||||||||||||    
T  4423100 atctctctaaatgaaggaaatgaagaggaaaataaatggagaggatcttaactc 4423047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 9124989 - 9125073
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| || || |||||||||| | | | |||| ||||| ||||||||||||  ||||||| |||| |||||||||||    
T  9124989 cattaattattttcaatatattttgtgtctttgtatttctatatggaggaaatggagaag-tattaaatagagatgatcttaactc 9125073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 36290614 - 36290561
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatg 298  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| |||||    
T  36290614 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatg 36290561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 36700884 - 36700967
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    ||||||||||||| || ||||||||||||| |||||||| ||||  ||||||| |||||||| ||||||||||||||| |||||    
T  36700884 cattaattattttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagaggatgttaac 36700967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 36716988 - 36717071
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    ||||||||||||| || ||||||||||||| |||||||| ||||  ||||||| |||||||| ||||||||||||||| |||||    
T  36716988 cattaattattttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagaggatgttaac 36717071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 5047471 - 5047539
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    ||||||||| || |||||||||||||||||||||||||||    | |||||||||||||||||||||||    
T  5047471 ttttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 5047539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 5446742 - 5446654
Alignment:
Q  246 attaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcattt 334  Q
    |||||| ||||||||| ||| |||||| | |||||||||||||  || ||||||||||||   ||||| ||||||||| ||||||||||    
T  5446742 attaatcatttttaagttttattgtgtttttatctctctaaataaaaaaaatggagaagattctaaatagagaggatcctaactcattt 5446654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 32887871 - 32887943
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcatttt 335  Q
    ||||||| ||||||||||||| ||||| |||||||||||| || |  ||||| ||||||||||||||| ||||    
T  32887871 ttttttgagtctatatctctccaaatgaaagaaatggagaggatacaaaatgaagaggatcttaactcttttt 32887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 1358454 - 1358540
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    |||||||||| ||||||||||||||||| ||||||| |  |||| ||| |||   | ||||||||||||| ||| ||||||||||||    
T  1358454 cattaattatatttaagattttttgtgtttatatcttttcaaattgaataaaataataagagattaaatgaagaagatcttaactca 1358540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 24413345 - 24413402
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggaga 302  Q
    ||||||||||||| |||||||||||||||  |||| ||| ||||||||||||| ||||    
T  24413345 cattaattattttcaagattttttgtgtccttatccctcaaaatggaagaaattgaga 24413402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 30210801 - 30210868
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||| ||||||||||||| ||| |||||||| | |   ||||||||||||||| ||||||    
T  30210801 ttttttgtgtctttatctctctaaatagaataaatggaggacaacataaatggagaggatcctaactc 30210868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 12380992 - 12381066
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| ||||    
T  12380992 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12381066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 12385059 - 12385133
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| ||||    
T  12385059 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12385133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 42720643 - 42720585
Alignment:
Q  265 ttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatc 323  Q
    |||| ||||| ||||||||||||| |||||||| ||||| || ||||||| ||||||||    
T  42720643 ttttttgtctttatctctctaaatagaagaaatagagaaaagtttaaatgaagaggatc 42720585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 45978015 - 45977941
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| ||||    
T  45978015 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 45977941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 50484379 - 50484305
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| |||||||| ||||  |||||||||||||     ||||||||||||||||||||    
T  50484379 ttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 50484305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 50294145 - 50294194
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||| |||||    
T  50294145 ttttcaagattttatgtgtctttatctctccaaatggaagaaattgagaa 50294194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 1609625 - 1609696
Alignment:
Q  259 aagattttttgtgtctatatctctctaaatggaagaaatggagaagaga-ttaaatggagaggatcttaactc 330  Q
    |||||||| ||||||| || ||||||||||| ||||||||| ||| |||  |||||| |||||||||||||||    
T  1609625 aagattttatgtgtctttacctctctaaatgaaagaaatgg-gaaaagacataaatgaagaggatcttaactc 1609696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 22536774 - 22536726
Alignment:
Q  276 tatctctctaaatggaagaaatggagaagagattaaatggagaggatct 324  Q
    ||||||| ||||||||||||||||||||||  |||||| ||||| ||||    
T  22536774 tatctctttaaatggaagaaatggagaagactttaaatagagagaatct 22536726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 39305400 - 39305372
Alignment:
Q  302 aagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||||||||||||||||||    
T  39305400 aagagattaaatggagaggatcttaactc 39305372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 21492786 - 21492700
Alignment:
Q  245 cattaattatttttaagattttt-tgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||| ||||||| ||||||||| ||||||| |||||||| |||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  21492786 cattacttattttcaagatttttgtgtgtctttatctctccaaatggaagaaatggaaaagagtttaaatggagaagatctcaactc 21492700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 24557444 - 24557359
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||| |||||| |  || |  |||||||||||||||||||||||    
T  24557444 cattaattattttcaagaatttttgtgtctatatatctctaaatggtagaaattggcaaaaatttaaatggagaggatcttaactc 24557359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 13035157 - 13035080
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatc 323  Q
    ||||||||||||| ||||||||| |||||| ||||| ||||||| ||||||||||| || || ||||||||| ||||||    
T  13035157 cattaattattttcaagattttt-gtgtctttatctttctaaatagaagaaatggaaaatagtttaaatggaaaggatc 13035080  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 24241587 - 24241501
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    |||||||||||||| |  |||| ||||||| |||||||||||||||| |||||||||| |  | |||||||||| |||||| |||||    
T  24241587 cattaattattttttactttttatgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatcttgactca 24241501  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 1809839 - 1809755
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||| ||  || ||||||||| |||||||||||| |||||||||| ||||||| || |||||||| |||| ||||||    
T  1809839 cattaattattttcaatgttctttgtgtctttatctctctaaa-ggaagaaatgaagaagagttttaatggagatgatcctaactc 1809755  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 1937218 - 1937278
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaaga 305  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||||||||||    
T  1937218 cattaattattttttactttttatgtgtctctatctctctaaatggaacaaatggagaaga 1937278  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 1098466 - 1098550
Alignment:
Q  244 gcattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||| |||||||||||||||||||| | |  |||||| |||||||   || | |||||||||||| |||||||||||    
T  1098466 gcattaattattttcaagattttttgtgtctatattttttgaaatggtagaaatg--aaaaaaattaaatggagatgatcttaactc 1098550  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 2836226 - 2836312
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcat 332  Q
    |||||||||||||||||||||||  ||| | |||||||  ||| |||| ||||| | ||||| ||||||||||| |||||||||||||    
T  2836226 cattaattatttttaagattttta-tgtatttatctctacaaaaggaaaaaatgaaaaagagtttaaatggagaagatcttaactcat 2836312  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 5033091 - 5033020
Alignment:
Q  262 attttttgtgtctatatctctctaaatggaagaaatggagaagagat-taaatggagaggatcttaactcatt 333  Q
    ||||| ||||||| |||||||| |||| |||||||||||||| | || |||||||||||||||||||| ||||    
T  5033091 attttatgtgtctttatctctccaaattgaagaaatggagaa-acatataaatggagaggatcttaacccatt 5033020  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 15901440 - 15901377
Alignment:
Q  267 ttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||| | |||||||| || | ||||||||| ||||||||||||||| ||| |||||||||||    
T  15901440 ttgtgtttttatctctcaaagtagaagaaatgaagaagagattaaatgaagatgatcttaactc 15901377  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 34746436 - 34746489
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatg 298  Q
    ||||||| ||||||||  ||| ||||||||||||||||  ||||||||||||||    
T  34746436 cattaatcatttttaaattttattgtgtctatatctcttcaaatggaagaaatg 34746489  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 2838762 - 2838818
Alignment:
Q  276 tatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcat 332  Q
    |||||||  |||||||| ||||| | ||||| |||||| ||||||||||||||||||    
T  2838762 tatctctacaaatggaaaaaatgaaaaagagtttaaatagagaggatcttaactcat 2838818  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 2843449 - 2843505
Alignment:
Q  276 tatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcat 332  Q
    |||||||  |||||||| ||||| | ||||| |||||| ||||||||||||||||||    
T  2843449 tatctctacaaatggaaaaaatgaaaaagagtttaaatagagaggatcttaactcat 2843505  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 208056 - 207976
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcattt 334  Q
    ||||||||||||| ||||||| |||||||| |||| ||||||||||||||     ||||||||||||||| |||| |||||    
T  208056 tttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaacccattt 207976  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 30460994 - 30461061
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||| |||| ||||||||||| ||||||||||||  | |||||||||| |||||| ||||    
T  30460994 ttttttgtgtctttatcactctaaatggaggaaatggagaaggaaataaatggagatgatcttgactc 30461061  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 2142356 - 2142413
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggaga 302  Q
    |||||||||||||| |  |||| ||||||| |||||||||||||||| ||||||||||    
T  2142356 cattaattattttttactttttatgtgtctttatctctctaaatggaggaaatggaga 2142413  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 2614493 - 2614577
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaact 329  Q
    ||||||||||||||||||||||||| || | ||| | || |||  | ||||||||| ||||  ||||||| ||||||||||||||    
T  2614493 cattaattatttttaagattttttgcgtttttatttttccaaacagtagaaatggaaaagaatttaaatgaagaggatcttaact 2614577  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 27095986 - 27095927
Alignment:
Q  276 tatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcatttt 335  Q
    |||||||||||||| ||||||||||||| || |||||| ||||||||  || ||||||||    
T  27095986 tatctctctaaatgaaagaaatggagaatagtttaaatcgagaggattgtatctcatttt 27095927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 1249228 - 1249302
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaac 328  Q
    |||| |||||||| ||||||| ||||| || |||| ||||||||||||||     ||||||||||||||||||||    
T  1249228 ttttcaagattttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaac 1249302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 2165551 - 2165636
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||||| |    |||||||| | |||||  |||| ||||||||||| ||||||||||||| ||| ||| |||||||    
T  2165551 cattaattatttttaaaaaaaattgtgtctttgtctcttcaaatagaagaaatggaaaagagattaaatgaagaagattttaactc 2165636  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 2177184 - 2177269
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||||| |    |||||||| | |||||  |||| ||||||||||| ||||||||||||| ||| ||| |||||||    
T  2177184 cattaattatttttaaaaaaaattgtgtctttgtctcttcaaatagaagaaatggaaaagagattaaatgaagaagattttaactc 2177269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 7162077 - 7162028
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  7162077 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 7162028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 24484891 - 24484838
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatg 298  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| |||||    
T  24484891 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatg 24484838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 17369 - 17427
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||||||||||||| |  |||| ||||||| ||||||||||||||||| ||||| ||||    
T  17369 cattaattattttttactttttatgtgtctttatctctctaaatggaacaaatgaagaa 17427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 3140 - 3177
Alignment:
Q  268 tgtgtctatatctctctaaatggaagaaatggagaaga 305  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  3140 tgtgtctttatctctctaaatggaggaaatggagaaga 3177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 3160 - 3197
Alignment:
Q  268 tgtgtctatatctctctaaatggaagaaatggagaaga 305  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  3160 tgtgtctttatctctctaaatggaggaaatggagaaga 3197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 16858 - 16773
Alignment:
Q  245 cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    |||||||||||||||| |    |||||||| | |||||  |||| ||||||||||| ||||||||||||| ||| ||| |||||||    
T  16858 cattaattatttttaaaaaaaattgtgtctttgtctcttcaaatagaagaaatggaaaagagattaaatgaagaagattttaactc 16773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 10556 - 10633
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactca 331  Q
    ||||||||||||||||| | | |||||||  ||||| ||||||||||||  |   ||||||||| |||||||||||||    
T  10556 tttttaagattttttgtatttttatctctacaaatgaaagaaatggagacaatcgtaaatggagtggatcttaactca 10633  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 22524 - 22596
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggaga-agagattaaatggagaggatctta 326  Q
    |||| |||||||| ||||| | |||||||||||||| |||||||||||| ||| | |||||||||| |||||||    
T  22524 ttttcaagattttatgtgtatttatctctctaaatgtaagaaatggagatagaca-taaatggagaagatctta 22596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 73922 - 73971
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaa 303  Q
    |||| |||||||| ||||| | ||||||||||||| ||||||||||||||    
T  73922 ttttcaagattttatgtgtttttatctctctaaattgaagaaatggagaa 73971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 13689 - 13641
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggaga 302  Q
    |||| |||||||| ||||||| |||||||| |||| |||||||||||||    
T  13689 ttttcaagattttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 29651 - 29723
Alignment:
Q  263 ttttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactcatttt 335  Q
    |||| ||||||| ||||| ||||  ||| ||||||||||| ||   |||||||||||||||||||||| ||||    
T  29651 ttttatgtgtctttatctatctagttggtagaaatggagaggatgataaatggagaggatcttaactcgtttt 29723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 9280 - 9356
Alignment:
Q  254 tttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggagaggatcttaactc 330  Q
    ||||||||||||  |||| || |||||||| ||||||||||||| |||||     ||||||||||||||||| ||||    
T  9280 tttttaagatttcatgtgcctttatctctccaaatggaagaaattgagaaacacataaatggagaggatcttcactc 9356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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