View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_14 (Length: 358)
Name: NF1310_low_14
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 43160920 - 43160602
Alignment:
| Q |
11 |
caaagggcctatcactgttccgctaactatgccaacaccactaagcaaagatttgcttaacttttctgtcatcttggacaacttccgcacactacattgc |
110 |
Q |
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| T |
43160920 |
caaagggcctatcactgttccgctaactatgccaacaccactaagcaaagatttgcttaacttttctgtcatcttggacaacttccgcacactacattgc |
43160821 |
T |
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| Q |
111 |
aaatacaaaagacaattatcactaacacataaccatcatccacttgtacactacataaattattgcgttatatatttgtgcatttcagtgtcatttttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43160820 |
aaatacaaaagacaattatcactaacacataaccatcatccacttgtacactacataaattattgcgttatatatttgtgcatttcagtgtcatttttgt |
43160721 |
T |
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| Q |
211 |
ataccgtttgaggtttttattgatcttgttcttcttcgaggcaccgacattcttgttgctcttactttcccaggccacaacaccatttttcttatctgca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43160720 |
ataccgtttgaggtttttattgatcttgttcttcttcgaggcaccgacattcttgttgctcttactttcccaggccacaacaccatttttcttatctgca |
43160621 |
T |
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| Q |
311 |
cgactatttaggatcattt |
329 |
Q |
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|||||||||||||||||| |
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| T |
43160620 |
tgactatttaggatcattt |
43160602 |
T |
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