View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_18 (Length: 352)
Name: NF1310_low_18
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 5573376 - 5573544
Alignment:
| Q |
35 |
acaatgataccaaatgactgattttcttttatatatgataatgatggtgaagtaatgttggcactaccgtggataaaataagaatataaaagatgtataa |
134 |
Q |
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| T |
5573376 |
acaatgataccaaatgactgattttcttttatatatgataatgatggtgaagtaatgttggcactaccgtgaataaaataagaatataaaagatgtataa |
5573475 |
T |
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| Q |
135 |
tcacatttatttttgaaaggatgaataatcacattttactaaattataatgttttaaatagtgatatta |
203 |
Q |
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| T |
5573476 |
tcacatttatttttgaaaggatgaataatcacattttattaaattgttatgttttaaatagtgatatta |
5573544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 5573573 - 5573655
Alignment:
| Q |
197 |
gatattaaactcccacaatatgtcgttttgggcttaactcatttggtacttgatatgaacaatgcataatatatgtaaaattt |
279 |
Q |
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| T |
5573573 |
gatattaaactcccacaatatggcgttttggatttaactcatttggtacttgatatgaacaatgtataatatatgtaaaattt |
5573655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 4033435 - 4033469
Alignment:
| Q |
246 |
ttgatatgaacaatgcataatatatgtaaaatttg |
280 |
Q |
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| T |
4033435 |
ttgatatgaacaatgcataatatatgtaagatttg |
4033469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 8616930 - 8616873
Alignment:
| Q |
228 |
gcttaactcatttggtacttgatatgaacaatgcataatatatgtaaaatttgaggtt |
285 |
Q |
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| T |
8616930 |
gcttaactcggttgatacttgatatgaacaatgtataatatatataaggtttgaggtt |
8616873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 3456867 - 3456839
Alignment:
| Q |
246 |
ttgatatgaacaatgcataatatatgtaa |
274 |
Q |
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| T |
3456867 |
ttgatatgaacaatgcataatatatgtaa |
3456839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 7792305 - 7792338
Alignment:
| Q |
255 |
acaatgcataatatatgtaaaatttgaggtttga |
288 |
Q |
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| T |
7792305 |
acaatgcataatatatgtaaaatctgaggtttga |
7792338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 3196575 - 3196603
Alignment:
| Q |
246 |
ttgatatgaacaatgcataatatatgtaa |
274 |
Q |
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|
| T |
3196575 |
ttgatatgaacaatgcataatatatgtaa |
3196603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 38071494 - 38071458
Alignment:
| Q |
239 |
ttggtacttgatatgaacaatgcataatatatgtaaa |
275 |
Q |
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| T |
38071494 |
ttggtacttgataggaacaatacataatatatgtaaa |
38071458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 3274016 - 3274052
Alignment:
| Q |
246 |
ttgatatgaacaatgcataatatatgtaaaatttgag |
282 |
Q |
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|||||||| ||||||||||||||||||||| |||||| |
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| T |
3274016 |
ttgatatggacaatgcataatatatgtaaagtttgag |
3274052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 26611086 - 26611058
Alignment:
| Q |
246 |
ttgatatgaacaatgcataatatatgtaa |
274 |
Q |
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| T |
26611086 |
ttgatatgaacaatgcataatatatgtaa |
26611058 |
T |
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