View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_19 (Length: 351)

Name: NF1310_low_19
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_19
NF1310_low_19
[»] chr3 (18 HSPs)
chr3 (1-340)||(49786701-49787033)
chr3 (280-347)||(40793203-40793270)
chr3 (255-337)||(4489857-4489939)
chr3 (273-347)||(28939697-28939771)
chr3 (251-336)||(35424134-35424219)
chr3 (253-336)||(1995580-1995663)
chr3 (276-347)||(11467227-11467298)
chr3 (273-328)||(49644383-49644438)
chr3 (251-328)||(35496109-35496186)
chr3 (253-340)||(36177221-36177308)
chr3 (299-340)||(29096158-29096199)
chr3 (252-340)||(45266880-45266969)
chr3 (252-336)||(15877760-15877844)
chr3 (252-336)||(35846159-35846243)
chr3 (302-340)||(7352127-7352165)
chr3 (299-340)||(14898467-14898508)
chr3 (303-336)||(52313937-52313970)
chr3 (303-336)||(53464347-53464380)
[»] chr2 (17 HSPs)
chr2 (252-336)||(9104573-9104657)
chr2 (251-336)||(18565751-18565836)
chr2 (252-340)||(40095798-40095886)
chr2 (272-346)||(14657513-14657587)
chr2 (255-328)||(32914478-32914551)
chr2 (252-340)||(4897248-4897336)
chr2 (252-340)||(4944642-4944730)
chr2 (256-336)||(39375719-39375799)
chr2 (301-347)||(3384731-3384777)
chr2 (253-291)||(37258158-37258196)
chr2 (276-340)||(8322179-8322243)
chr2 (274-340)||(5147128-5147194)
chr2 (252-317)||(37069932-37069997)
chr2 (253-337)||(3739874-3739958)
chr2 (252-336)||(6858994-6859078)
chr2 (268-328)||(29984902-29984962)
chr2 (300-340)||(33386719-33386759)
[»] scaffold0015 (1 HSPs)
scaffold0015 (253-336)||(56599-56682)
[»] chr4 (15 HSPs)
chr4 (274-340)||(38567974-38568040)
chr4 (255-340)||(41377389-41377474)
chr4 (255-340)||(55875849-55875934)
chr4 (252-336)||(23560017-23560101)
chr4 (253-340)||(5415180-5415267)
chr4 (252-336)||(779897-779981)
chr4 (300-347)||(7907407-7907454)
chr4 (299-346)||(43355013-43355060)
chr4 (273-340)||(46382024-46382091)
chr4 (255-328)||(52327028-52327101)
chr4 (299-347)||(34388850-34388898)
chr4 (273-336)||(55876020-55876083)
chr4 (299-333)||(9268381-9268415)
chr4 (251-312)||(43264456-43264517)
chr4 (253-340)||(48262993-48263084)
[»] chr8 (10 HSPs)
chr8 (251-336)||(40278976-40279061)
chr8 (253-340)||(11425490-11425577)
chr8 (300-340)||(27594274-27594314)
chr8 (300-340)||(35158923-35158963)
chr8 (251-336)||(1156284-1156369)
chr8 (301-337)||(34954345-34954381)
chr8 (272-328)||(37479212-37479268)
chr8 (253-336)||(17312863-17312945)
chr8 (299-333)||(9682374-9682408)
chr8 (252-336)||(18227011-18227095)
[»] chr1 (13 HSPs)
chr1 (255-336)||(7900161-7900242)
chr1 (252-336)||(1035747-1035831)
chr1 (276-336)||(19322831-19322891)
chr1 (252-336)||(37457626-37457710)
chr1 (299-340)||(26707131-26707172)
chr1 (251-340)||(51613256-51613345)
chr1 (248-340)||(10574370-10574462)
chr1 (252-336)||(19993387-19993471)
chr1 (252-336)||(50428489-50428573)
chr1 (253-336)||(43496401-43496484)
chr1 (299-333)||(46823646-46823680)
chr1 (255-340)||(47394377-47394462)
chr1 (252-336)||(23571018-23571102)
[»] chr6 (6 HSPs)
chr6 (252-340)||(2844143-2844231)
chr6 (273-347)||(10682508-10682582)
chr6 (252-333)||(13685397-13685478)
chr6 (252-322)||(30775353-30775423)
chr6 (300-340)||(19763591-19763631)
chr6 (299-347)||(19789280-19789328)
[»] chr7 (13 HSPs)
chr7 (256-347)||(29681415-29681506)
chr7 (253-340)||(44396395-44396482)
chr7 (253-337)||(43692561-43692645)
chr7 (253-337)||(49081247-49081331)
chr7 (273-340)||(43598833-43598900)
chr7 (255-328)||(48252907-48252980)
chr7 (280-340)||(36725798-36725858)
chr7 (274-340)||(36118058-36118124)
chr7 (253-337)||(38346409-38346494)
chr7 (255-336)||(49080771-49080851)
chr7 (273-340)||(12879278-12879345)
chr7 (300-336)||(8404797-8404833)
chr7 (296-336)||(37626915-37626955)
[»] chr5 (7 HSPs)
chr5 (274-340)||(14593889-14593955)
chr5 (252-347)||(39060199-39060294)
chr5 (299-347)||(4925116-4925164)
chr5 (252-336)||(34769580-34769664)
chr5 (275-336)||(34383710-34383771)
chr5 (299-340)||(35470332-35470373)
chr5 (300-336)||(9959328-9959364)
[»] scaffold0110 (2 HSPs)
scaffold0110 (252-317)||(13803-13868)
scaffold0110 (252-317)||(21540-21605)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 49786701 - 49787033
Alignment:
Q  1 cgataatataagatcataccttagggtcccctccttcattcttgcgatcatggcagctgtagagatattctctatgattcagcgggccacttgatcaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49786701 cgataatataagatcataccttagggtcccctccttcattcttgcgatcatggcagctgtagagatattctctatgattcagcgggccacttgatcaatc 49786800  T
Q  101 tctgtggtatatgatatatatacacattacttctagcatatcagtgttctcttttctagcttactactcatttccctttgccaaattattaatcgtatct 200  Q
    ||||||||||||         | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49786801 tctgtggtatat---------atacattacttctagcatatcagtgttctcttttctagcttactactcatttccctttgccaaattattaattgtatct 49786891  T
Q  201 tgtt-agagcaac-acatggtccacatccatgccacccatatgataatgataagtggtataaatgggactcatataatatattatattatttcttacatc 298  Q
    | || |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49786892 tttttagagcaaccacatggtccccatccatgccacccatatgataatgatgagtggtataaatgggactcatataatatattatattatttcttacatc 49786991  T
Q  299 tcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  49786992 tcaattatttaaaccactcaactatattttataaatattcat 49787033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 40793203 - 40793270
Alignment:
Q  280 ttatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40793203 ttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatcactc 40793270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 4489939 - 4489857
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 337  Q
    ||||||||||||| ||||||||||||||||||||||  || ||  |||||||||| ||||||||| || ||||||||||||||    
T  4489939 gtataaatgggacacatataatatattatattattttatatattccaattatttataccactcaattatattttataaatatt 4489857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 347
Target Start/End: Original strand, 28939697 - 28939771
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    ||||||||||||||| |||  || |||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  28939697 taatatattatattacttcacacttctcaattatttaaactactcaactacattttctaaatattcatatcactc 28939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 35424134 - 35424219
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||| |||| |||||| ||||||||| |||  |  | |||||||||||||||||||||||||||||| |||||||    
T  35424134 agtggtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatat 35424219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 1995580 - 1995663
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||| | || |||||| ||||||||| |||  || || ||||||||||||||||| ||||||||||| |||||||    
T  1995580 tggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatat 1995663  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 11467227 - 11467298
Alignment:
Q  276 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||||||| |||  || |||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  11467227 tatattatattacttcacacttctcaattatttaaaccaatcaactacattttctaaatatccatatcactc 11467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 49644438 - 49644383
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  49644438 taatatattatattacttcacacttctcaattatttaaaccactcaactacatttt 49644383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 35496109 - 35496186
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    ||||||||||||||| |  | |||||||||||||||| |||  || ||||||||||||||| || |||||||||||||    
T  35496109 agtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactacatttt 35496186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 36177308 - 36177221
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||| | || |||||| ||||||||| |||  || |  ||||||||| ||||||||| ||||||||| |||||||||||    
T  36177308 tggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacattttttaaatattcat 36177221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 29096158 - 29096199
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  29096158 tcaattatttaaaccactcaactacattatttaaatattcat 29096199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 45266969 - 45266880
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaacta-cattttataaatattcat 340  Q
    |||||||||||||| | ||   |||| |||||||||||||  || ||||||| |||||||||||| ||||| |||||| |||||||||||    
T  45266969 gtggtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaactagcattttctaaatattcat 45266880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 15877760 - 15877844
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||| | || |||||| ||||||||| |||  |  | || ||||||||||||||||||||| ||||| |||||||    
T  15877760 gtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaactatattttctaaatat 15877844  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 35846159 - 35846243
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||| ||||||||| ||||  |||||  |||||||||||   || | |||||||||||||||| ||||||||||||| |||||||    
T  35846159 gtggaataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatat 35846243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 7352165 - 7352127
Alignment:
Q  302 attatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  7352165 attatttaaaccattcaactacattttttaaatattcat 7352127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 14898508 - 14898467
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||| ||||||||||| ||||||||||| |||||||||||    
T  14898508 tcaattgtttaaaccactaaactacattttctaaatattcat 14898467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 52313937 - 52313970
Alignment:
Q  303 ttatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||||||||||||||| |||||||    
T  52313937 ttatttaaaccactcaactacattttctaaatat 52313970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 53464347 - 53464380
Alignment:
Q  303 ttatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||||||||||||||| |||||||    
T  53464347 ttatttaaaccactcaactacattttctaaatat 53464380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 9104573 - 9104657
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||| ||||| |||||| ||||||||||||  |  |||||||||||||||||||||||||||||||| |||||||    
T  9104573 gtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaactacattttttaaatat 9104657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 18565836 - 18565751
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||| ||||||||||| ||||||||| ||   || |||||||||||||||  ||||||||||||||| |||||||    
T  18565836 agtggtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatat 18565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 40095886 - 40095798
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||  | ||| ||||||||||||||| ||   || |||||||||||||||| ||||||||||||||| |||||||||||    
T  40095886 gtggtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcat 40095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 14657587 - 14657513
Alignment:
Q  272 ataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcact 346  Q
    |||||| |||||||||||||  || |  ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  14657587 ataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatattcatatcact 14657513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 32914551 - 32914478
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    ||||||||||| | |||||||||| |||||||| |||  || | ||||||||||||||||||||||||||||||    
T  32914551 gtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactcaactacatttt 32914478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 4897336 - 4897248
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||  | |||||||||||||| |||| |||  |  | |||||||||||||| ||||||||||||||| |||||||||||    
T  4897336 gtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatattcat 4897248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 4944730 - 4944642
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||  | |||||||||||||| |||| |||  |  | |||||||||||||| ||||||||||||||| |||||||||||    
T  4944730 gtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatattcat 4944642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 39375799 - 39375719
Alignment:
Q  256 tataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||| | ||||||||||||||||||||| ||| ||  |  ||||||||||||||||||||||| ||||| |||||||    
T  39375799 tataaatgagtctcatataatatattatattacttcatattttccaattatttaaaccactcaactatattttttaaatat 39375719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 3384731 - 3384777
Alignment:
Q  301 aattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||    
T  3384731 aattatttaaacaattcaactacattttataaatattcatatcactc 3384777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 37258158 - 37258196
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttc 291  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  37258158 tggtataaatgggtctcatataatatattatattatttc 37258196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 8322243 - 8322179
Alignment:
Q  276 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||| |||  || | ||||||||||||||||||||| ||||||||  ||||||||||    
T  8322243 tatattatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcat 8322179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 5147128 - 5147194
Alignment:
Q  274 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||| ||  || || | |||||||||| || ||||||||||||| |||||||||||    
T  5147128 aatatattatattatctcacacttccctattatttaaatcattcaactacattttctaaatattcat 5147194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 37069997 - 37069932
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 317  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  37069997 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 37069932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 3739958 - 3739874
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 337  Q
    |||||||||| || |||| |||||| ||||||||||||  ||  | ||||||||||||| || ||| |||||| || ||||||||    
T  3739958 tggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatcattcatctacatattctaaatatt 3739874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 6858994 - 6859078
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||| | ||  ||||| | ||||||| |||  || || ||||||||||||||||| ||||| ||||| |||||||    
T  6858994 gtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaactatattttctaaatat 6859078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 29984902 - 29984962
Alignment:
Q  268 tcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    |||| |||| |||||||||||||  ||| ||| |||||||||||| ||||||||| |||||    
T  29984902 tcatttaatttattatattattttatacttcttaattatttaaacaactcaactaaatttt 29984962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 33386719 - 33386759
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  33386719 caattatttaaaccactcaattgcattttctaaatattcat 33386759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 56682 - 56599
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||| || |||||||||||||||| ||   || |||||||||||||||||||||||||||||||| |||||||    
T  56682 tggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactcaactacattttctaaatat 56599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 38568040 - 38567974
Alignment:
Q  274 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  38568040 aatatattatattacttcttacttttcaattatttaaaccactcaactacattttttaaatattcat 38567974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 41377474 - 41377389
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||| || | |||||||||||||||| |||  || |||||||||||| ||| ||||||||||||||| |||||||||||    
T  41377474 gtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaactacattttttaaatattcat 41377389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 55875934 - 55875849
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||| | || |||||| ||||||||| |||  |  ||||||||| |||||||||||||||||||||| |||||||||||    
T  55875934 gtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaactacattttttaaatattcat 55875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 23560017 - 23560101
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||||| || ||||||||||| |||| ||   || |  ||||||||||||||||||||||||||||| |||||||    
T  23560017 gtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaactacattttctaaatat 23560101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 5415180 - 5415267
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||  || |||||||||||||||| ||   || || |||||||||||  |||||||||||||||| |||||||||||    
T  5415180 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaactacattttctaaatattcat 5415267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 779897 - 779981
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||| |||| |||||| ||||||||| |||  |  | || ||||||||||||||||||||| ||||| |||||||    
T  779897 gtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaactatattttctaaatat 779981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 7907454 - 7907407
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  7907454 caattatttaaaccactcaactacattttctaaatatccatatcactc 7907407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 43355013 - 43355060
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcatctcact 346  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  43355013 tcaattatttaaaccactcaattacattttttaaatattcatatcact 43355060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 46382091 - 46382024
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||| |||  || ||||||||||||||||||||| |||| |||||  ||||||||||    
T  46382091 taatatattatattagttcacacttctcaattatttaaaccactccactatatttttcaaatattcat 46382024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 52327101 - 52327028
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    ||||||||||| | || ||||||| |||||||| |||  || | ||||||||||||| ||||||||||||||||    
T  52327101 gtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactcaactacatttt 52327028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 34388850 - 34388898
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  34388850 tcaattatttaaaccactaaaccacattttctaaatattcatatcactc 34388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 55876020 - 55876083
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||| |||  || |||||||||||||||| | ||||||||| ||| |||||||    
T  55876020 taatatattatattacttcacacttctcaattatttaaactattcaactacactttctaaatat 55876083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 9268381 - 9268415
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaa 333  Q
    |||||||||||||||||||||||||||||| ||||    
T  9268381 tcaattatttaaaccactcaactacattttctaaa 9268415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 43264456 - 43264517
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaac 312  Q
    ||||||||||||||  ||||  ||||||||||||||| |||  || ||||||||||||||||    
T  43264456 agtggtataaatggacctcacctaatatattatattacttcacacttctcaattatttaaac 43264517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 48262993 - 48263084
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttctt---acatctcaattatttaaacca-ctcaactacattttataaatattcat 340  Q
    ||||||||||| |||||| ||||||||||||| |||| |||   || | ||||||||||||| ||  | ||||||||||| |||||||||||    
T  48262993 tggtataaatgagactcacataatatattatactattactttacacttttcaattatttaaatcattttaactacattttctaaatattcat 48263084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 40279061 - 40278976
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||||| || |||||||||||||||| ||  ||| |  ||||||||||||||||||||||||||||| |||||||    
T  40279061 agtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaactacattttctaaatat 40278976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 11425490 - 11425577
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||  || |||||||||||||||| ||   || || ||||||||||| | ||||||||||||||| |||||||||||    
T  11425490 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaaccgactcaactacattttctaaatattcat 11425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 27594314 - 27594274
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  27594314 caattatttaaaccactcaactacattttctaaatattcat 27594274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 35158923 - 35158963
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  35158923 caattatttaaaccactcaactacattttctaaatattcat 35158963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 1156369 - 1156284
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||| ||||  ||||| | |||||||||||  || || ||||||||||||||||| ||||| || || |||||||    
T  1156369 agtggtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaactatatcttctaaatat 1156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 34954345 - 34954381
Alignment:
Q  301 aattatttaaaccactcaactacattttataaatatt 337  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34954345 aattatttaaaccactcaactacattttttaaatatt 34954381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 37479268 - 37479212
Alignment:
Q  272 ataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    |||||||||||||||| ||   || | ||||||||||||||||||||||||||||||    
T  37479268 ataatatattatattactttaaacttttcaattatttaaaccactcaactacatttt 37479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 17312945 - 17312863
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||| ||||  |||||  |||||||| |||  || | ||||||||||||||||||||||||||| || |||||||    
T  17312945 tggtataaatgggtctcag-taatactttatattacttcacacttttcaattatttaaaccactcaactacatcttctaaatat 17312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 9682408 - 9682374
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaa 333  Q
    |||||||||||||||||||||||||||||| ||||    
T  9682408 tcaattatttaaaccactcaactacattttctaaa 9682374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 18227095 - 18227011
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||| ||| | || |||||| |||||||||  ||  || || |||||||||||||||  |||||||||||| |||||||    
T  18227095 gtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatccaactacattttttaaatat 18227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 7900161 - 7900242
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||| || |||||||||||||||| ||  ||| || ||||||||||||||||||||||||||||| |||||||    
T  7900161 gtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaactacattttctaaatat 7900242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 1035747 - 1035831
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||| ||||| | ||| ||||| | |||||||||||  || |||||||||||||||||||| ||||| ||||| |||||||    
T  1035747 gtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaaactatattttctaaatat 1035831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 19322891 - 19322831
Alignment:
Q  276 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||| | | ||| |||||||||||||||||| ||||||||||||| |||||||    
T  19322891 tatattatattactacatacttctcaattatttaaaccattcaactacattttttaaatat 19322831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 37457626 - 37457710
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||| | ||  ||||| | |||||||||||  || ||||||||||| |||||||||||||| ||||| |||||||    
T  37457626 gtggtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaactatattttctaaatat 37457710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 26707172 - 26707131
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  26707172 tcaattatttaaaccattcaactacattttctaaatattcat 26707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 51613256 - 51613345
Alignment:
Q  251 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||  | || ||||||  |||||||| |||  || |  ||||||||||||||||||||||||||||| |||||| ||||    
T  51613256 agtggtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcat 51613345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 10574462 - 10574370
Alignment:
Q  248 ataagtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||||| |   || |||||||| ||||||| |||  |  ||||||||||||||| ||||||| || ||||| |||||||||||    
T  10574462 ataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttttaaatattcat 10574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 19993471 - 19993387
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||| ||||||  || |||||||||||||||| ||   || | | |||||||||||||||||||||| ||||| |||||||    
T  19993471 gtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaactatattttctaaatat 19993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 50428573 - 50428489
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||  ||||   |||| ||||||||| |||  || ||||||||||||||| |||||||||| ||||| |||||||    
T  50428573 gtggtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactatattttctaaatat 50428489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 43496401 - 43496484
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||| ||| | || |||||| |||||||||  ||  || |||||||||||||||| | ||||||||||||| |||||||    
T  43496401 tggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaactacattttttaaatat 43496484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 46823680 - 46823646
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaa 333  Q
    |||||||||||||||||||||||||||||| ||||    
T  46823680 tcaattatttaaaccactcaactacattttctaaa 46823646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 47394377 - 47394462
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||   || |||||| ||||||||| |||  || || ||||||||||||| ||||  ||||||||| |||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactcgtctacattttttaaatattcat 47394462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 23571102 - 23571018
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||| | || |||||| ||||||||| |||  |  | || ||||||||||| ||||||||| ||||| |||||||    
T  23571102 gtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactcaactatattttttaaatat 23571018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 2844231 - 2844143
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||| |  ||| |||||| ||||||||| |||  || || ||||||||||||||||||||||||||||| |||||||||||    
T  2844231 gtggtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatattcat 2844143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 10682582 - 10682508
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||  |||||| ||| ||||||    
T  10682582 taatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatccatgtcactc 10682508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 13685397 - 13685478
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaa 333  Q
    |||||||||||||| | || |||||| ||||||||||||  ||| | ||||||||||||| |||||||||| ||||| ||||    
T  13685397 gtggtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 30775353 - 30775423
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaacta 322  Q
    |||||||||||||| |  | |||||| ||||||||| |||  || | ||||||||||||||||||||||||    
T  30775353 gtggtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaacta 30775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 19763591 - 19763631
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||||| || |||||||| |||||||||||    
T  19763591 caattatttaaaccacttaattacattttctaaatattcat 19763631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 19789280 - 19789328
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    ||||||||||||| |||| || |||||||| ||||||||||| ||||||    
T  19789280 tcaattatttaaatcacttaattacattttctaaatattcatatcactc 19789328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 29681415 - 29681506
Alignment:
Q  256 tataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||| |||||| |||||||||||||||||||  || ||   |||||||| ||||||| ||||||||||||||||||| ||| ||||||    
T  29681415 tataaatgagactcacataatatattatattattttatatattcaaattatttgaaccacttaactacattttataaatatccatatcactc 29681506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 44396482 - 44396395
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||  || |||||||||||||||| ||   || || ||||||||||| ||||||||||||||||| |||||||||||    
T  44396482 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaactacattttctaaatattcat 44396395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 43692645 - 43692561
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 337  Q
    |||||||||| || | || |||||| |||||||||||||  || |||||||||||||||||||||| ||| ||||| ||||||||    
T  43692645 tggtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatctaaattttttaaatatt 43692561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 49081331 - 49081247
Alignment:
Q  253 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 337  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||  | ||||||||||||| || ||| ||||||||| ||||||||    
T  49081331 tggtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttctaaatatt 49081247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 43598900 - 43598833
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    ||||||||||||||| |||  || |||||||||||||||||||||||||| |||||  ||||||||||    
T  43598900 taatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcat 43598833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 48252980 - 48252907
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 328  Q
    ||||||||||| | |||||||||| |||||||| |||  || |  |||||||||||||||||||||||||||||    
T  48252980 gtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccactcaactacatttt 48252907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 36725858 - 36725798
Alignment:
Q  280 ttatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||   || |||||||||||||||||||||||||||| ||| |||||||||||    
T  36725858 ttatattattttacacttctcaattatttaaaccactcaactacaatttctaaatattcat 36725798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 36118058 - 36118124
Alignment:
Q  274 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||| ||||||||||||   || |||| |||||||||||||||||| |||||||| |||||||||||    
T  36118058 aatacattatattatttaacacttctctattatttaaaccactcaattacattttctaaatattcat 36118124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 38346409 - 38346494
Alignment:
Q  253 tggtataaatgggactcatataatatatta-tattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 337  Q
    ||||||||||||  | |||||||||||| | ||||| ||| ||  | | |||||||||||||||||||||||||||| ||||||||    
T  38346409 tggtataaatggaccccatataatatataaatattacttcatattttttaattatttaaaccactcaactacattttttaaatatt 38346494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 49080771 - 49080851
Alignment:
Q  255 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||| || | |||||||||||||||| |||  || | ||||||||||||||||||  |||||||||| |||||||    
T  49080771 gtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccact-tactacattttttaaatat 49080851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 12879278 - 12879345
Alignment:
Q  273 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||| |||||||| |||  || |||||||||||||||| || |||||| ||||| |||||||||||    
T  12879278 taatattttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcat 12879345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 8404797 - 8404833
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8404797 caattatttaaaccactcaattacattttttaaatat 8404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 37626955 - 37626915
Alignment:
Q  296 atctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  37626955 atctcaattatttaaacaactcaactatattttttaaatat 37626915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 14593889 - 14593955
Alignment:
Q  274 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||| |||  | ||||||||||||||||||| |||| ||||||||||||||||||||    
T  14593889 aatatattatattacttcacaaatctcaattatttaaaccattcaattacattttataaatattcat 14593955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 39060199 - 39060294
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||||||||| | || |||||| ||||||||| |||  || | || ||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  39060199 gtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaactatattttctaaatatccatatcactc 39060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 4925116 - 4925164
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcatctcactc 347  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  4925116 tcaattatttaaaccactcaactacattttttaaatatccatatcactc 4925164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 34769664 - 34769580
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    |||||||||| ||| | || |||||| |||||||||  ||  || || ||||||||||||||| ||||||||||||| |||||||    
T  34769664 gtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattcaactacattttttaaatat 34769580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 34383771 - 34383710
Alignment:
Q  275 atatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||| ||   || |||||||||||||||||||  ||||||||||| |||||||    
T  34383771 atatattatattactttacacttctcaattatttaaaccacaaaactacattttctaaatat 34383710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 35470373 - 35470332
Alignment:
Q  299 tcaattatttaaaccactcaactacattttataaatattcat 340  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  35470373 tcaattatttaaactactcaactatattttctaaatattcat 35470332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 9959364 - 9959328
Alignment:
Q  300 caattatttaaaccactcaactacattttataaatat 336  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9959364 caattatttaaactactcaactacattttctaaatat 9959328  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 13803 - 13868
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 317  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  13803 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 13868  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 21540 - 21605
Alignment:
Q  252 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 317  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  21540 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 21605  T

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