View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_2 (Length: 692)

Name: NF1310_low_2
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_2
NF1310_low_2
[»] chr7 (1 HSPs)
chr7 (20-663)||(21482084-21482726)


Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 20 - 663
Target Start/End: Original strand, 21482084 - 21482726
Alignment:
Q  20 atgaataagaagaataactcaccggtgttctctagcaaatacatcctgcttttgttgttaggccaatatctgatgctccaagaagaaataatcaaaagat 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21482084 atgaataagaagaataactcaccggtgttctccagcaaatacatcctgcttttgttgttaggccaatatctgatgctccaagaagaaataatcaaaagat 21482183  T
Q  120 aaaattttagtcgcaatgtatcatcatcataatttatgaacataaaaaacaaaatgatgaagttaaatttgtccatgaaaatttgcttacctataacgca 219  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21482184 aaaattttagtcccaatgtatcatcatcataatttataaacataaaaaacaaaatgatgaagttaaatttgtccatgaaaatttgcttacctataacgca 21482283  T
Q  220 tattccaaactcgagaagttccaatgtcttccattgtaatcgaaattccatctctcgcctccaattctggcaaatgtgtttctgcctctttctgatgttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21482284 tattccaaactcgagaagttccaatgtcttccattgtaatcgaaattccatctcttgcctccaattctggcaaatgtgtttctgcctctttctgatgttt 21482383  T
Q  320 ttgcaataacattatgaatcaataattt-gtttctcataaaatgtaattaaataatagataaatagaaaatctataattacttttggcaaaacaattctc 418  Q
    ||||||||| | |||||||||||| |||  ||||||||||||||||| | |||||| || |||||||||||| |||||||||||||||||||||||||||    
T  21482384 ttgcaataa-actatgaatcaatattttattttctcataaaatgtaa-tgaataattgaaaaatagaaaatcaataattacttttggcaaaacaattctc 21482481  T
Q  419 cccagacttccgacatcactttgcttcaaaaccttttgtagaaggaacctcaagttcttttctggcttccaaccctatcaatcaaatacatcaaacacat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21482482 cccagacttccgacatcactttgcttcaaaaccttttgtagaaggaacctcaagttcttttctggcttccaaccctatcaatcaaatacatcaaacacat 21482581  T
Q  519 tattcataaagcaagatagttgtgtttaaagtcgcacannnnnnnnaatttgacagttataatcgagtgatcggataatggctgttagttgaagttatag 618  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21482582 tattcataaagcaagatagttgtgtttaaagtcgcacattttttataatttgacagttataattgagtgatcggataatggctgttagttgaagttatag 21482681  T
Q  619 taatgttgcaaaccattgtattgccgtatctgcataagctacaat 663  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  21482682 taatgttgcaaaccattgtattgcgatatctgcataagctacaat 21482726  T

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