View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_20 (Length: 348)
Name: NF1310_low_20
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_20 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 18557181 - 18556873
Alignment:
| Q |
11 |
cacagaagcttggacgaccagaaagacggaactgtaaccaaaaagttctagcatccacagaagttctctgattgtcatcacttctctctgaacttcatgt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18557181 |
cacaaaagcttggacgaccagaaagacggaactgtaaccaaaaagttctagcatccgcagaagttctctggttgtcatcacttctctctgaacttcatgt |
18557082 |
T |
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| Q |
111 |
tagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcactgtcaatcccgtcttccatagtcgcatgaagcacattgccata |
210 |
Q |
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| T |
18557081 |
tagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcactgtcaatcccctcttccatagtcgcatgaagcacattgccata |
18556982 |
T |
|
| Q |
211 |
catattcattttgtcagagatcatgtcagaaataaaaagattcgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556981 |
gatattcattttgtcagagatcatgtcagaaataaaaagattcgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgt |
18556882 |
T |
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| Q |
311 |
ctaagcaac |
319 |
Q |
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| T |
18556881 |
ctaggcaac |
18556873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 68 - 319
Target Start/End: Original strand, 24494868 - 24495119
Alignment:
| Q |
68 |
cagaagttctctgattgtcatcacttctctctgaacttcatgttagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcac |
167 |
Q |
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| T |
24494868 |
cagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaatcttggtgccacttatctcac |
24494967 |
T |
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| Q |
168 |
tgtcaatcccgtcttccatagtcgcatgaagcacattgccatacatattcattttgtcagagatcatgtcagaaataaaaagattcgggttcaacatgtt |
267 |
Q |
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| T |
24494968 |
tgtcaatcccgtcttccatagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtt |
24495067 |
T |
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| Q |
268 |
tccactaaagatcagctagcagattgcctcaccaaacctctgtctaagcaac |
319 |
Q |
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| T |
24495068 |
tccactatagatcatctatcagattgcctcaccaaacctctgtctaggcaac |
24495119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 61 - 319
Target Start/End: Original strand, 86326 - 86584
Alignment:
| Q |
61 |
gcatccacagaagttctctgattgtcatcacttctctctgaacttcatgttagtttacccactattcctaccatctactgtgacaatctcggtgccactt |
160 |
Q |
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| T |
86326 |
gcatccgcagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttaccaactattcctaccatctactgtgacaatctcggtgccacgt |
86425 |
T |
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| Q |
161 |
atctcactgtcaatcccgtcttccatagtcgcatgaagcacattgccatacatattcattttgtcagagatcatgtcagaaataaaaagattcgggttca |
260 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
86426 |
atctcactatcaatcccgtcttccatagtcgcatgaagcatactgccatagatattcattttgttagagatcatgtcagaaataaaaagattcgggttca |
86525 |
T |
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| Q |
261 |
acatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaagcaac |
319 |
Q |
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| T |
86526 |
acatgtttccactacagatcagctaacagattgcctcaccaaacctctgtctaggcaac |
86584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 23426975 - 23426932
Alignment:
| Q |
11 |
cacagaagcttggacgaccagaaagacggaactgtaaccaaaaa |
54 |
Q |
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| T |
23426975 |
cacagaagcttggacgaccagaaagaaggaacaataaccaaaaa |
23426932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 544780 - 544820
Alignment:
| Q |
14 |
agaagcttggacgaccagaaagacggaactgtaaccaaaaa |
54 |
Q |
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| T |
544780 |
agaagcttggacgaccagaaagaaggaacaataaccaaaaa |
544820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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