View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_27 (Length: 311)
Name: NF1310_low_27
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 22934166 - 22934064
Alignment:
| Q |
152 |
taagcttccattagccgtgacatcgtaaacaagtaggaggtcgcctttacagtgacaccacccaagtaacggaaccaaattccagtggcgaagctggcct |
251 |
Q |
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| T |
22934166 |
taagcttccatttgacatgaaatcgtacacaagtaggaggtcgcctctgcggcgacaccacccaagtaactgaaccaaattccgatggcgaagccggcct |
22934067 |
T |
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| Q |
252 |
atg |
254 |
Q |
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||| |
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| T |
22934066 |
atg |
22934064 |
T |
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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 15627500 - 15627616
Alignment:
| Q |
152 |
taagcttccattagccgtgacatcgtaaacaagtaggaggtcgcctttacagtgacaccacccaagtaacggaaccaaattccagtggcgaagctggcct |
251 |
Q |
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|||||||||||||||| ||| || || |||||||| ||||||||||| ||| ||||||| ||||||| | |||| ||||||| ||| |||||| ||||| |
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| T |
15627500 |
taagcttccattagccatgaagtcatacacaagtagcaggtcgcctttgcagcgacaccatccaagtagctgaactaaattcctgtgacgaagccggcct |
15627599 |
T |
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| Q |
252 |
atggtggtgatttcaga |
268 |
Q |
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| T |
15627600 |
atgctggcgatttcaga |
15627616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16861901 - 16861859
Alignment:
| Q |
13 |
aatatagtcattgaggttcataggaaactcttgtatcaatgct |
55 |
Q |
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| T |
16861901 |
aatatagtcattgaggttcataggaaactcttctatcaatgct |
16861859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 7284868 - 7284944
Alignment:
| Q |
61 |
gaggtttagcctgtcaattttacataac---tgagcttatgcaaaaatatgacgtgctaaataaggaataattaagg |
134 |
Q |
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||||||||||||| |||| ||||||||| ||||| ||||| |||| ||| ||||||||||| |||||||||||| |
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| T |
7284868 |
gaggtttagcctgccaatgttacataaccaatgagcctatgcggaaatttgaagtgctaaataaagaataattaagg |
7284944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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