View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_28 (Length: 305)
Name: NF1310_low_28
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 21834014 - 21833740
Alignment:
| Q |
30 |
tattgataatgaaaattttatggcagttttccatatgtgtgacaaggatcagaatggttttgtctctacatctgagttgcattattttatgacatatatc |
129 |
Q |
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| T |
21834014 |
tattgataatgaaaattttgtggcagttttccatatgtgtgacaaggatcagaatggttttgtctctacatctgagttgcattattttatgacatatatc |
21833915 |
T |
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| Q |
130 |
ggccaaaaggtgacatatgaagatgtggaagaatttgttcgtgaggctgatgttgatggtgatggacaaataaacattgaggagtttgtcaaagatttgt |
229 |
Q |
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| T |
21833914 |
ggccaaaaggtgacatatgaagatgtggaagaatttgttcgtgaggctgattttgatggtgatggacaaataaacattgaggagtttgtcaaagatttgt |
21833815 |
T |
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| Q |
230 |
cctaggagcggatcaaa--------gttatgattgtgcatattaagttctaccacttagctattctgatattgttg |
297 |
Q |
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| T |
21833814 |
cc-aggagcggatcaaacacatgaccttatgattgtgcatattaagttctaccacttagctattctgatgttgttg |
21833740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 21854371 - 21854217
Alignment:
| Q |
69 |
tgacaaggatcagaatggttttgtctctacatctgagttgcattattttatgacatatatcggccaaaaggtgacatatgaagatgtggaagaatttgtt |
168 |
Q |
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| T |
21854371 |
tgacaaggatcataatggttttgtctctgcatctgagttgcattattacttgacaaatcacggcaccaaggtgaccaaggaagaagtggacgagtatgtt |
21854272 |
T |
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| Q |
169 |
cgtgaggctgatgttgatggtgatggacaaataaacattgaggagtttgtcaaag |
223 |
Q |
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| T |
21854271 |
cgtgaggctgatgttgatggtgatggacaaataaactttgaggagtttgtcaaag |
21854217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 21843219 - 21843074
Alignment:
| Q |
75 |
ggatcagaatggttttgtctctacatctgagttgcattattttatgacatatatcggccaaaaggtgacatatgaagatgtggaagaatttgttcgtgag |
174 |
Q |
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|||||| |||||||||||| || |||||||||||||||||| ||||| || ||| |||| ||| ||||||| ||| || |||||||||||| |
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| T |
21843219 |
ggatcataatggttttgtcactgcatctgagttgcattattacttgacaaatcaaggcattaaggcgaccaatgaagaagtgagcgactttgttcgtgag |
21843120 |
T |
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| Q |
175 |
gctgatgttgatggtgatggacaaataaacattgaggagtttgtca |
220 |
Q |
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| T |
21843119 |
gctgattctgatagtgatggacatctaagctttaaggagtttgtca |
21843074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 38317259 - 38317203
Alignment:
| Q |
167 |
ttcgtgaggctgatgttgatggtgatggacaaataaacattgaggagtttgtcaaag |
223 |
Q |
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| T |
38317259 |
ttcgcgaggctgatgttgatggtgatggtcagatcaactatgaggagtttgtcaaag |
38317203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 8921172 - 8921137
Alignment:
| Q |
169 |
cgtgaggctgatgttgatggtgatggacaaataaac |
204 |
Q |
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| T |
8921172 |
cgtgaggctgatgttgatggtgatggtcaaataaac |
8921137 |
T |
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