View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_3 (Length: 545)

Name: NF1310_low_3
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_3
NF1310_low_3
[»] chr5 (8 HSPs)
chr5 (294-545)||(18557429-18557680)
chr5 (1-231)||(18557119-18557366)
chr5 (316-451)||(42742367-42742504)
chr5 (316-454)||(2706973-2707114)
chr5 (294-451)||(35846986-35847148)
chr5 (353-450)||(25341649-25341747)
chr5 (350-454)||(29685774-29685879)
chr5 (355-451)||(39368815-39368912)
[»] chr8 (9 HSPs)
chr8 (294-545)||(40531126-40531375)
chr8 (294-545)||(544286-544533)
chr8 (20-231)||(544595-544820)
chr8 (82-214)||(40530914-40531046)
chr8 (329-439)||(38387843-38387956)
chr8 (20-90)||(23426932-23427002)
chr8 (316-439)||(46269-46396)
chr8 (351-439)||(1579087-1579176)
chr8 (82-129)||(31180414-31180461)
[»] chr7 (9 HSPs)
chr7 (298-545)||(35206632-35206878)
chr7 (332-454)||(27993564-27993689)
chr7 (331-454)||(46262147-46262273)
chr7 (356-442)||(6003328-6003415)
chr7 (316-442)||(2570072-2570201)
chr7 (20-81)||(24931568-24931629)
chr7 (399-447)||(25153217-25153266)
chr7 (176-224)||(27993797-27993845)
chr7 (96-132)||(46262467-46262503)
[»] chr1 (9 HSPs)
chr1 (345-545)||(17891454-17891655)
chr1 (95-231)||(38564596-38564732)
chr1 (294-452)||(38564795-38564952)
chr1 (316-451)||(38709865-38710002)
chr1 (316-440)||(4391519-4391646)
chr1 (358-454)||(13987577-13987674)
chr1 (21-82)||(38564504-38564565)
chr1 (294-417)||(39908887-39909013)
chr1 (419-450)||(27031872-27031903)
[»] chr2 (12 HSPs)
chr2 (327-545)||(44888256-44888475)
chr2 (474-545)||(14328168-14328239)
chr2 (326-443)||(42048255-42048375)
chr2 (383-446)||(23665440-23665504)
chr2 (344-442)||(41958175-41958273)
chr2 (96-224)||(9561049-9561178)
chr2 (93-179)||(42048639-42048725)
chr2 (351-451)||(4162051-4162151)
chr2 (344-442)||(37128963-37129062)
chr2 (353-454)||(9560816-9560918)
chr2 (20-81)||(9561211-9561272)
chr2 (316-451)||(4397461-4397599)
[»] chr3 (14 HSPs)
chr3 (87-224)||(18973084-18973221)
chr3 (316-442)||(45181506-45181635)
chr3 (294-451)||(2782100-2782261)
chr3 (306-451)||(16284968-16285116)
chr3 (307-446)||(18983168-18983308)
chr3 (316-451)||(17324188-17324326)
chr3 (21-90)||(2786886-2786955)
chr3 (358-454)||(3968578-3968675)
chr3 (358-454)||(4000130-4000227)
chr3 (418-450)||(823467-823499)
chr3 (419-454)||(20710736-20710771)
chr3 (20-82)||(55129436-55129498)
chr3 (96-130)||(55129530-55129564)
chr3 (382-446)||(30127242-30127307)
[»] chr6 (3 HSPs)
chr6 (294-545)||(12129110-12129361)
chr6 (90-178)||(12128584-12128672)
chr6 (351-446)||(7546465-7546561)
[»] chr4 (7 HSPs)
chr4 (294-451)||(40813812-40813972)
chr4 (334-454)||(17416537-17416660)
chr4 (358-445)||(37707392-37707480)
chr4 (344-451)||(26500306-26500414)
chr4 (316-417)||(1799058-1799161)
chr4 (419-450)||(26474854-26474885)
chr4 (356-451)||(10388515-10388611)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 294 - 545
Target Start/End: Original strand, 18557429 - 18557680
Alignment:
Q  294 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18557429 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtgagttgaggggtgc 18557528  T
Q  394 cgttttgatttgtgtcgggagtctatgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggcgc 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||| ||||||||||||||||||||||||| |    
T  18557529 cgttttgatttgtgtcgggagtctatgggccgatcacttttgattcgagatccagagctagtttttttaatgcaagttcttttcgactttttggtggctc 18557628  T
Q  494 ctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 545  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18557629 ctccgacttatcggttgttgagtggtgggtgaatctgatcgtttgatgcaac 18557680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 18557119 - 18557366
Alignment:
Q  1 cttctgtggatgctagagctttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccctcg---------------- 84  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||                    
T  18557119 cttctgcggatgctagaactttttggttacagttccgtctttctggtcgtccaagcttttgtgtgctttcccaacctcccctcgtcgtcggtctttggtc 18557218  T
Q  85 -gcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagt 183  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18557219 ggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagt 18557318  T
Q  184 ggtccagagggtggtgcttaaaaggtgttcggggcggtgctattggtg 231  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  18557319 ggtccagagggtggcgcttaaaaggtgttcggggcggtgctattggtg 18557366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 451
Target Start/End: Complemental strand, 42742504 - 42742367
Alignment:
Q  316 tttggcattgggatattggtgggccgagtttggg--caggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||| ||| |||||||||| | |||||  |  |||||| |||||||| ||||||||| |||||| ||| |||||||| |||||| |||||||||||    
T  42742504 tttggcatcgggttattggtgggtcaagtttttgaacaggtttaggtgtctgctctggtggttcgtgggttgtggggtgcctttttgacttgtgtcggga 42742405  T
Q  414 gtctatgggccgatcacttttgattcgagatcgagagc 451  Q
    ||||   || ||||| ||||||||||||| ||| ||||    
T  42742404 gtcttgtgggcgatcgcttttgattcgaggtcgggagc 42742367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 454
Target Start/End: Original strand, 2706973 - 2707114
Alignment:
Q  316 tttggcattgggatattggtgggccgagtt--tgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    ||||||||  || |||||||| ||||||||  ||| |||||||||||| || ||| ||||| |||||  |||||||||||  |  ||| |||||||||||    
T  2706973 tttggcatctggttattggtgtgccgagttcttggacaggttaaggtgcctgctccggtggttcgtgagttgaggggtgctttaatgacttgtgtcggga 2707072  T
Q  414 gtcta-tgggccgatcacttttgattcgagatcgagagctag 454  Q
    ||||| ||  |||||||||||||||||||| ||| |||||||    
T  2707073 gtctagtgaaccgatcacttttgattcgaggtcgggagctag 2707114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 451
Target Start/End: Original strand, 35846986 - 35847148
Alignment:
Q  294 ccaccttttctttgtcttcg-agtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgagggg 390  Q
    |||||||||||||||||| | | |||||||| ||| |||||||||| | |||||  || || |||||||||||| ||||||||| | |||  |||| |||    
T  35846986 ccaccttttctttgtctttggattttggcatcgggttattggtgggtcaagtttttggacatgttaaggtgtctgctctggtggtttgtgagttgatggg 35847085  T
Q  391 tgcc-gttttgatttgtgtcgggag-tctatgggccgatcacttttgattcgagatcgagagc 451  Q
    ||||  |||||| |||||||||||| | | ||||||||||  |||||||||||| ||| ||||    
T  35847086 tgccttttttgacttgtgtcgggagttttgtgggccgatcgattttgattcgaggtcgggagc 35847148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 25341649 - 25341747
Alignment:
Q  353 gttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagag 450  Q
    |||||||| ||| ||||||||  |||||  || ||||||||| |  |||| ||||||||||||||  |||||||||||||||||||| ||||| |||||    
T  25341649 gttaaggtttctgctctggtgcttcgtgagttcaggggtgccttgatgatgtgtgtcgggagtctggtgggccgatcacttttgatttgagattgagag 25341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 29685774 - 29685879
Alignment:
Q  350 caggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgag 448  Q
    |||||||||| |||| ||||||||| |||||  |||||| || || |  |||  ||||||||||||||| |||| ||||||||||||||||||  ||| |    
T  29685774 caggttaaggggtctgctctggtggttcgtgagttgaggagtaccttaatgacctgtgtcgggagtctaatgggtcgatcacttttgattcgaagtcggg 29685873  T
Q  449 agctag 454  Q
    ||||||    
T  29685874 agctag 29685879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 451
Target Start/End: Original strand, 39368815 - 39368912
Alignment:
Q  355 taaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgagatcgagagc 451  Q
    |||||||||| | ||||||| |||||  ||||| |||| | |||||| |||||||||||||| | |||||||| | ||||||||||||| ||| ||||    
T  39368815 taaggtgtcttccctggtggttcgtgagttgagaggtgtctttttgacttgtgtcgggagtcttgtgggccgaccgcttttgattcgaggtcgggagc 39368912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 6e-57; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 294 - 545
Target Start/End: Original strand, 40531126 - 40531375
Alignment:
Q  294 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 393  Q
    ||||||||||| |||||| ||||||| |||| |||||| ||| | | |||||||| ||||||||||||||| |||||||||||| ||  |||||||||||    
T  40531126 ccaccttttctctgtctttgagtttgacattaggatatcggtagactgagtttggacaggttaaggtgtctgctctggtgggtcttgagttgaggggtgc 40531225  T
Q  394 cgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggcg 492  Q
    ||||||||||||||||   ||||| ||||||||||||||||||||||||||||| |||||||         || ||||||||| || ||||||||||||     
T  40531226 cgttttgatttgtgtc--aagtctgatgggccgatcacttttgattcgagatcgggagctagttttttg-gtgcaagttctttccggctttttggtggct 40531322  T
Q  493 cctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 545  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  40531323 cctctgacttatcggttgttgagtggtgggtgaatctgatcgtgtgatgcaac 40531375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 294 - 545
Target Start/End: Complemental strand, 544533 - 544286
Alignment:
Q  294 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||| | |||  |||| || |||    
T  544533 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttt------ttaaggtgtctgctctggtggattgtgagttgacggatgc 544440  T
Q  394 cgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagctagnnnnnnna-atgtaagttcttttcgactttttggtggc 491  Q
    ||||||||||||||||||||||||  |||| |||||||||| ||||||||||||  ||||||         ||| |||||||||||| |||||| |||||    
T  544439 cgttttgatttgtgtcgggagtctggtgggtcgatcactttagattcgagatcggaagctagtttttttttatgcaagttcttttcggcttttttgtggc 544340  T
Q  492 gcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 545  Q
     ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  544339 tcctccaactcatcggttgttgagtggtgggtgaatctgatcgtttgatgcaac 544286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 544820 - 544595
Alignment:
Q  20 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccctcg-----------------gcgtcgtcctttaggtct 102  Q
    ||||||||||  ||||| ||||||||||||||||||||||| |||| |||||||||||| |||||                 ||||||||||||||||||    
T  544820 tttttggttattgttccttctttctggtcgtccaagcttctttgtgctttcccaacctctcctcgtcgtcggtctttggttggcgtcgtcctttaggtct 544721  T
Q  103 gtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggtgctt 202  Q
     |||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  544720 ataaagggtcgtgcagttgtggtggatc---tctctggatgatttgagatttttctcctctgcgaagaaagacggtatagtggtccagagggtggcgctg 544624  T
Q  203 aaaaggtgttcggggcggtgctattggtg 231  Q
    | ||||||||| |||||||||||||||||    
T  544623 ataaggtgttcagggcggtgctattggtg 544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 40530914 - 40531046
Alignment:
Q  82 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtata 181  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||| |    
T  40530914 tcggcggcgtcctttaggtctgcaaagggtcgtgcagttgtggtggatccagtccctggatgatttgagatttttctccttcgcgaagaaagacggtaca 40531013  T
Q  182 gtggtccagagggtggtgcttaaaaggtgttcg 214  Q
     |||||||||||||||  || ||||||||||||    
T  40531014 ttggtccagagggtggcactgaaaaggtgttcg 40531046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 439
Target Start/End: Original strand, 38387843 - 38387956
Alignment:
Q  329 tattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccg 425  Q
    |||||||||| |||||||  || ||||||||||||| | ||||||||| |||||  |||||||||||| |||||| || ||||||||||| | ||||||     
T  38387843 tattggtgggtcgagtttttggacaggttaaggtgtttgctctggtggttcgtgagttgaggggtgcctttttgacttatgtcgggagtcttgtgggcca 38387942  T
Q  426 atcacttttgattc 439  Q
    ||||||||||||||    
T  38387943 atcacttttgattc 38387956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 23426932 - 23427002
Alignment:
Q  20 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccctcggcgtcg 90  Q
    ||||||||||  ||||| |||||||||||||||||||||||||| | |||||||||||| ||||| |||||    
T  23426932 tttttggttattgttccttctttctggtcgtccaagcttctgtgcgctttcccaacctctcctcgtcgtcg 23427002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 439
Target Start/End: Complemental strand, 46396 - 46269
Alignment:
Q  316 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggt-cgtggattgaggggtgccgttttgatttgtgtcggg 412  Q
    |||| ||| ||| |||||||||| |||||||  || |||||| | |||||| ||| ||||||| ||||  |||||||||||| |||||| ||||||||||    
T  46396 tttgacatcgggttattggtgggtcgagtttttggacaggtttatgtgtctgctccggtgggttcgtgagttgaggggtgcctttttgacttgtgtcggg 46297  T
Q  413 agtc-tatgggccgatcacttttgattc 439  Q
    |||| | |||||| ||| ||||||||||    
T  46296 agtcttgtgggccaatcgcttttgattc 46269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 1579087 - 1579176
Alignment:
Q  351 aggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattc 439  Q
    ||||| |||||||| ||||||||| |||||  ||||||| ||||  ||| | |||||| ||||||||  |||||||||||||||||||||    
T  1579087 aggtttaggtgtctgctctggtggttcgtgagttgagggatgcctcttttacttgtgttgggagtcttgtgggccgatcacttttgattc 1579176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 31180461 - 31180414
Alignment:
Q  82 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggat 129  Q
    |||||| ||| ||| ||||||| |||||||||||||||||||||||||    
T  31180461 tcggcggcgttcttaaggtctgcaaagggtcgtgcagttgtggtggat 31180414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 298 - 545
Target Start/End: Complemental strand, 35206878 - 35206632
Alignment:
Q  298 cttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgtt 397  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||| ||  ||||||||| || ||    
T  35206878 cttttctctgtctttgagtttggcattgggatattggtgggccgaatttggacaagttaaggtgtctgctctggtgggtcatgagttgaggggtcccttt 35206779  T
Q  398 ttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggcgcctc 496  Q
    || |||||||| ||||||||  ||||||||||||||||||| |||||||| |||||||       |||| |||||||||||| | |||||||||| |||     
T  35206778 tttatttgtgttgggagtctggtgggccgatcacttttgatccgagatcgggagctag-ttttttaatgcaagttcttttcggc-ttttggtggctcctt 35206681  T
Q  497 cgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 545  Q
    ||||||||| || ||| |||||||||||||| ||||| |||||||||||    
T  35206680 cgacttatcagtagtttagtggtgggtgaatctgatcctttgatgcaac 35206632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 454
Target Start/End: Complemental strand, 27993689 - 27993564
Alignment:
Q  332 tggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatc 428  Q
    |||||||||||||||  ||  |||||| ||||| | ||||||||| |||||  |||||||||| | || |||||||||||||||||||  ||| ||||||    
T  27993689 tggtgggccgagtttttggataggttatggtgtttgctctggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatc 27993590  T
Q  429 acttttgattcgagatcgagagctag 454  Q
    |||||||||||||||||| |||||||    
T  27993589 acttttgattcgagatcgggagctag 27993564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 454
Target Start/End: Complemental strand, 46262273 - 46262147
Alignment:
Q  331 ttggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgat 427  Q
    ||||||||||||||||  ||  || ||| ||||||| ||| ||||  |||||  |||||||||||| |||||||| |||| ||||||||  |||||||||    
T  46262273 ttggtgggccgagtttttggatagtttatggtgtcttctccggtgattcgtgagttgaggggtgcctttttgattggtgttgggagtctggtgggccgat 46262174  T
Q  428 cacttttgattcgagatcgagagctag 454  Q
    ||||||||||||||||||| |||||||    
T  46262173 cacttttgattcgagatcgggagctag 46262147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 442
Target Start/End: Original strand, 6003328 - 6003415
Alignment:
Q  356 aaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgag 442  Q
    ||||||||| ||| ||||| | ||| |||||| | |||| |||||||||||||| |||||| |||||||||||| |||||||||||||    
T  6003328 aaggtgtctgctccggtggtttgtgaattgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgag 6003415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 442
Target Start/End: Original strand, 2570072 - 2570201
Alignment:
Q  316 tttggcattgggatattggtgggccgag--tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||| ||| |||||||||| ||||  ||||| ||| ||||||||| | ||||||| | |||||  |||||||||||| |||||| ||||||| |||    
T  2570072 tttggcatcgggttattggtgggtcgaggttttggtcagattaaggtgtttgctctggttgctcgtgagttgaggggtgcctttttgacttgtgtcagga 2570171  T
Q  414 gtct-atgggccgatcacttttgattcgag 442  Q
    ||||  |||||  ||| |||||||||||||    
T  2570172 gtctggtgggcttatcgcttttgattcgag 2570201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 24931568 - 24931629
Alignment:
Q  20 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccc 81  Q
    ||||||||||| ||||  |||| || |||||||||||||||||| | |||||||||||||||    
T  24931568 tttttggttactgttctttcttcctagtcgtccaagcttctgtgcgctttcccaacctcccc 24931629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 25153217 - 25153266
Alignment:
Q  399 tgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcga 447  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  25153217 tgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcga 25153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 27993845 - 27993797
Alignment:
Q  176 ggtatagtggtccagagggtggtgcttaaaaggtgttcggggcggtgct 224  Q
    |||| ||||||||||||||||||||| ||  |||||||| |||||||||    
T  27993845 ggtacagtggtccagagggtggtgctgaatcggtgttcgtggcggtgct 27993797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 46262503 - 46262467
Alignment:
Q  96 taggtctgtaaagggtcgtgcagttgtggtggatcca 132  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  46262503 taggtctgcaaagggtcgtgcaattgtggtggatcca 46262467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 345 - 545
Target Start/End: Original strand, 17891454 - 17891655
Alignment:
Q  345 ttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgaga 443  Q
    |||||||||||||||||||| ||||| ||| |||||  |||||||||||||| | ||| ||||| |||||||| |||| |||||||||||||||||||||    
T  17891454 ttgggcaggttaaggtgtcttctctgatggatcgtgagttgaggggtgccgtgtagatgtgtgttgggagtctgatggaccgatcacttttgattcgaga 17891553  T
Q  444 tcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggcgcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgca 543  Q
    | | |||| ||        ||| |||||||||||  |||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  17891554 ttgggagcaagttttctttatgcaagttcttttcagctttttggtggctcctccgatttatcggttgttgagtggtgtgtgaatttgatcgtttgatgca 17891653  T
Q  544 ac 545  Q
    ||    
T  17891654 ac 17891655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 38564596 - 38564732
Alignment:
Q  95 ttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagaggg 194  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||| ||  | | |||| |||||    
T  38564596 ttaggtctgcaaagggtcgtgcagttgtggtggatccagtctctggatgatttgagatttttctcctccacgaagatagacagttcaatagtccggaggg 38564695  T
Q  195 tggtgcttaaaaggtgttcggggcggtgctattggtg 231  Q
    ||| | | |||||||||| ||||||||||| ||||||    
T  38564696 tggcgttgaaaaggtgtttggggcggtgcttttggtg 38564732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 294 - 452
Target Start/End: Original strand, 38564795 - 38564952
Alignment:
Q  294 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 393  Q
    |||||| ||||  |||||||| ||||||||  |||| ||||||||| |||||||| |||||| |||||| | ||| | |||||||||  |||||||||||    
T  38564795 ccacctgttctccgtcttcgaatttggcatcaggattttggtgggc-gagtttggacaggtttaggtgtttgctcagatgggtcgtgagttgaggggtgc 38564893  T
Q  394 cgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagct 452  Q
    | |||||||||||||  |||||||  |||||||||| ||||||||||||||||| |||||    
T  38564894 c-ttttgatttgtgttaggagtctcgtgggccgatcgcttttgattcgagatcgggagct 38564952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 451
Target Start/End: Original strand, 38709865 - 38710002
Alignment:
Q  316 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||| ||| |||||||||| |||||||  || ||||||||||||| |  |||||||| |||||  |||||||||||| |||||  |||| ||||||    
T  38709865 tttggcatcgggttattggtgggtcgagtttttggacaggttaaggtgtttgttctggtggttcgtgagttgaggggtgcctttttgccttgtttcggga 38709964  T
Q  414 gtctatgggccgatcacttttgattcgagatcgagagc 451  Q
    |||| ||||| |||| ||||||||||||| ||| ||||    
T  38709965 gtctttgggctgatcgcttttgattcgaggtcgggagc 38710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 440
Target Start/End: Original strand, 4391519 - 4391646
Alignment:
Q  316 tttggcattgggatattggtgggccgag--tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||| ||| | |||||||| ||||  ||||| |||||||||||||||  |||||||| |||||  |||||||||||  |||||  |||||||||||    
T  4391519 tttggcatcgggttcttggtgggtcgaggttttggtcaggttaaggtgtctgttctggtggttcgtgagttgaggggtgcatttttgccttgtgtcggga 4391618  T
Q  414 gtc-tatgggccgatcacttttgattcg 440  Q
    ||| | |||||| ||| |||||||||||    
T  4391619 gtcttgtgggccaatcgcttttgattcg 4391646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 454
Target Start/End: Original strand, 13987577 - 13987674
Alignment:
Q  358 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctag 454  Q
    ||||||| ||||||||| |||||  |||||||||||| |  ||||||||||||||| |||  |||||| ||| |||||| |||||||||| |||||||    
T  13987577 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggagctag 13987674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 38564504 - 38564565
Alignment:
Q  21 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccct 82  Q
    |||||||||| ||||| ||||| ||||||| |||||||||||| | ||||||||||||||||    
T  38564504 ttttggttactgttccttctttatggtcgtacaagcttctgtgcgctttcccaacctcccct 38564565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 39909013 - 39908887
Alignment:
Q  294 ccaccttttctttgtcttcg-agtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgagggg 390  Q
    ||||||||||| |||||| | | |||||||| ||| |||||||||  |||||||  || |||||| |||||| | ||||||||| |||||  ||||||||    
T  39909013 ccaccttttctctgtctttggattttggcatcgggttattggtggatcgagtttttggacaggtttaggtgtatgctctggtggttcgtgagttgagggg 39908914  T
Q  391 tgccgttttgatttgtgtcgggagtct 417  Q
    |||  |||||| |||||||| ||||||    
T  39908913 tgcttttttgacttgtgtcgtgagtct 39908887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Complemental strand, 27031903 - 27031872
Alignment:
Q  419 tgggccgatcacttttgattcgagatcgagag 450  Q
    ||||||||||||||||||||||||||||||||    
T  27031903 tgggccgatcacttttgattcgagatcgagag 27031872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 327 - 545
Target Start/End: Complemental strand, 44888475 - 44888256
Alignment:
Q  327 gatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccg 425  Q
    |||||||||||||||||||||| |||||| | |||||| |||||||||||||||  |||||||||||| | ||||||| |||||||||| |  |||||||    
T  44888475 gatattggtgggccgagtttggacaggtttacgtgtctgctctggtgggtcgtgagttgaggggtgccttattgatttatgtcgggagtttggtgggccg 44888376  T
Q  426 atcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggcgcctccgacttatcggttgttgagtggtgggtga 525  Q
    |||| |||| ||||||||| | |||||||        | | ||||||| |  | |||||||||||| |||||||||||||||  |||||||| |||  ||    
T  44888375 atcattttttattcgagattgggagctagtttttttgacgcaagttctctcaggctttttggtggctcctccgacttatcggaagttgagtgttggacga 44888276  T
Q  526 atatgatcgtttgatgcaac 545  Q
    ||||||||||||||||||||    
T  44888275 atatgatcgtttgatgcaac 44888256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 474 - 545
Target Start/End: Original strand, 14328168 - 14328239
Alignment:
Q  474 tttcgactttttggtggcgcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 545  Q
    ||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14328168 tttcggctgttttgtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 14328239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 443
Target Start/End: Complemental strand, 42048375 - 42048255
Alignment:
Q  326 ggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagt-ctatggg 422  Q
    ||||| |||||||||||||||  || || |||||||||||| ||||||||| |||||  ||||| |||||| | ||||||| |||||||||| | |||||    
T  42048375 ggataatggtgggccgagtttttggacatgttaaggtgtctgctctggtggttcgtgagttgagaggtgccttgttgatttctgtcgggagtccgatggg 42048276  T
Q  423 ccgatcacttttgattcgaga 443  Q
    | |||||||||||||||||||    
T  42048275 ctgatcacttttgattcgaga 42048255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 23665504 - 23665440
Alignment:
Q  383 ttgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcg 446  Q
    |||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23665504 ttgaggggtgccatttttatttgtatcgggagtctagtgggccgatcacttttgattcgagatcg 23665440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 442
Target Start/End: Original strand, 41958175 - 41958273
Alignment:
Q  344 tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtctatgggccgatcacttttgattcgag 442  Q
    ||||| ||||||||||||||| ||||||||| | |||  |||| ||||||| |||||| ||||||| |||||||   |||||| |||||||||||||||    
T  41958175 tttggacaggttaaggtgtctgctctggtggtttgtgagttgaagggtgcctttttgacttgtgtcaggagtcttgtggccgaccacttttgattcgag 41958273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 9561178 - 9561049
Alignment:
Q  96 taggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagt--ggtccagagg 193  Q
    |||||||| |||||||||||||||||||||||||||  |  || ||||  | |||  ||||||||||||||| | ||||||||| |||  ||||||||||    
T  9561178 taggtctgcaaagggtcgtgcagttgtggtggatcctgtacctggatgggtggag-gttttctcctccgcgacgtaagacggtacagtggggtccagagg 9561080  T
Q  194 gtggtgcttaaaaggtgttcggggcggtgct 224  Q
    |||| ||| ||| | |||||| |||||||||    
T  9561079 gtggcgctaaaacgatgttcgtggcggtgct 9561049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 42048725 - 42048639
Alignment:
Q  93 ctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggta 179  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||| |||| || | | ||| |||||| ||||| |||||| ||||    
T  42048725 ctttaggtctgcaaagggtcttgcagttgtggtggatccagtctctggatggttggtggtttatctccttcgcgatgaaagatggta 42048639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 451
Target Start/End: Complemental strand, 4162151 - 4162051
Alignment:
Q  351 aggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgaga 449  Q
    ||||| |||||| | ||||||||| ||| |  |||||||||||| |  |||||||||| ||||||||  |||||||||||||||||||||||||||| ||    
T  4162151 aggttgaggtgtatgctctggtggttcgagagttgaggggtgcc-tagtgatttgtgttgggagtctggtgggccgatcacttttgattcgagatcggga 4162053  T
Q  450 gc 451  Q
    ||    
T  4162052 gc 4162051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 442
Target Start/End: Complemental strand, 37129062 - 37128963
Alignment:
Q  344 tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgag 442  Q
    ||||| |||||| |||||||| ||||||||| |||||  ||||  |||||| |||||| ||||||  |||||||  |||||||||| |||||||||||||    
T  37129062 tttggacaggttcaggtgtctgctctggtggttcgtgagttgataggtgcctttttgacttgtgttaggagtcttgtgggccgatcgcttttgattcgag 37128963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 9560918 - 9560816
Alignment:
Q  353 gttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagc 451  Q
    |||| ||||||| ||||||| | |||||  |||||||||||| |  ||||||||||||  ||| |  ||| |||||||||||||||||||||||| ||||    
T  9560918 gttatggtgtctgctctggtagttcgtgagttgaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggagc 9560819  T
Q  452 tag 454  Q
    |||    
T  9560818 tag 9560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 9561272 - 9561211
Alignment:
Q  20 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccc 81  Q
    ||||||||||  ||||| |||| || |||||||||||||||||| | |||||||||||||||    
T  9561272 tttttggttattgttccttcttccttgtcgtccaagcttctgtgcgctttcccaacctcccc 9561211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 451
Target Start/End: Complemental strand, 4397599 - 4397461
Alignment:
Q  316 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||| | | |||||||||| |||||||  || || ||| | |||||| || |||||| |||||  |||||||||||| |||||| || | ||||||    
T  4397599 tttggcatagagttattggtgggtcgagtttttggacaagtttatgtgtctgctatggtggttcgtgagttgaggggtgccattttgacttctctcggga 4397500  T
Q  414 gtc-tatgggccgatcacttttgattcgagatcgagagc 451  Q
    ||| | ||||| |||| ||||||||||||| ||| ||||    
T  4397499 gtcttgtgggctgatcgcttttgattcgaggtcgggagc 4397461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 18973084 - 18973221
Alignment:
Q  87 gtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggt 186  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| | ||||    
T  18973084 gtcgtcctttaggtttgcaaagggtcgtgcagttgtggtggatccagtctttggatgatttgagatttttctcctccgcgaagaaagacggtacattggt 18973183  T
Q  187 ccagagggtggtgcttaaaaggtgttcggggcggtgct 224  Q
       | |||||| | | || |||||||||||||||||||    
T  18973184 gatgtgggtggcgttgaataggtgttcggggcggtgct 18973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 442
Target Start/End: Original strand, 45181506 - 45181635
Alignment:
Q  316 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||||||| |||||||||| |||||||  || ||||||| ||||||| ||||||||| |||||  |||||||||||| |||||| || ||||||||    
T  45181506 tttggcattgggttattggtgggtcgagtttttggacaggttagggtgtctgctctggtggttcgtgagttgaggggtgcctttttgacttttgtcggga 45181605  T
Q  414 gtc-tatgggccgatcacttttgattcgag 442  Q
    ||| | |||||| ||| |||||||||||||    
T  45181606 gtcttgtgggccaatcgcttttgattcgag 45181635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 294 - 451
Target Start/End: Complemental strand, 2782261 - 2782100
Alignment:
Q  294 ccaccttttctttgtctt-cgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgagggg 390  Q
    |||||||||||||| ||| ||| ||||||||   |||| |||||||||||||||  || ||||||||||||||| ||||||||| | |||  ||||||||    
T  2782261 ccaccttttctttggcttacgaatttggcatctagataatggtgggccgagtttttggacaggttaaggtgtctgctctggtggtttgtgagttgagggg 2782162  T
Q  391 tgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagc 451  Q
    |||| |  |||||||||||| ||||||  |||| |||||||||||||||  |||||| ||||    
T  2782161 tgccttaatgatttgtgtcgagagtctggtgggacgatcacttttgattttagatcgggagc 2782100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 451
Target Start/End: Original strand, 16284968 - 16285116
Alignment:
Q  306 tgtcttcgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatt 403  Q
    |||||| || |||||||| | | |||||||||| |||||||  || ||||||||||||||| |||| |||| |||||  |||||||||||| |||||| |    
T  16284968 tgtctttgattttggcatcgagctattggtgggtcgagtttttggacaggttaaggtgtctgctcttgtggttcgtgagttgaggggtgcctttttgact 16285067  T
Q  404 tgtgtcgggagtc-tatgggccgatcacttttgattcgagatcgagagc 451  Q
     ||||| |||||| | |||||||||| ||||||||||||| ||| ||||    
T  16285068 agtgtctggagtcttgtgggccgatcgcttttgattcgaggtcgggagc 16285116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 446
Target Start/End: Original strand, 18983168 - 18983308
Alignment:
Q  307 gtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgt 406  Q
    |||||||| |||||||| |||||| ||||||||||||||||    |||| || ||| | ||||||||||| |||  ||||| |||||| | ||||| |||    
T  18983168 gtcttcgaatttggcatcgggataatggtgggccgagtttgtatgggtttagatgtgtgctctggtgggttgtgagttgagtggtgccttattgatctgt 18983267  T
Q  407 gtcgggagtct-atgggccgatcacttttgattcgagatcg 446  Q
    |||| |||||| |||| ||||||| || |||||||||||||    
T  18983268 gtcgagagtctgatggaccgatcaattatgattcgagatcg 18983308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 451
Target Start/End: Complemental strand, 17324326 - 17324188
Alignment:
Q  316 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||| ||| ||| |||||||||| |||||||  ||  ||||| |||||||||||| ||||| |||||  |||||||||||| |||| | || ||||| ||    
T  17324326 tttgacatcgggttattggtgggtcgagtttttggataggtttaggtgtctactccggtggttcgtgagttgaggggtgccttttttacttatgtcgtga 17324227  T
Q  414 gtc-tatgggccgatcacttttgattcgagatcgagagc 451  Q
    ||| | |||||||||| ||||||||||||| ||| ||||    
T  17324226 gtcttgtgggccgatctcttttgattcgaggtcgggagc 17324188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 2786955 - 2786886
Alignment:
Q  21 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccctcggcgtcg 90  Q
    |||||||||| ||||| | | ||||| |||||||||||||||| | |||||||||||||||||| |||||    
T  2786955 ttttggttactgttccttttatctggccgtccaagcttctgtgcgctttcccaacctcccctcgtcgtcg 2786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 454
Target Start/End: Complemental strand, 3968675 - 3968578
Alignment:
Q  358 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctag 454  Q
    ||||||| ||||||||| |||||  |||||||||||| |  |||||||||||||||||||  ||| || ||| |||||| |||||||||  |||||||    
T  3968675 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctag 3968578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 454
Target Start/End: Original strand, 4000130 - 4000227
Alignment:
Q  358 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctag 454  Q
    ||||||| ||||||||| |||||  |||||||||||| |  |||||||||||||||||||  ||| || ||| |||||| |||||||||  |||||||    
T  4000130 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctag 4000227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 823499 - 823467
Alignment:
Q  418 atgggccgatcacttttgattcgagatcgagag 450  Q
    |||||||||||||||||||||||||||||||||    
T  823499 atgggccgatcacttttgattcgagatcgagag 823467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 454
Target Start/End: Complemental strand, 20710771 - 20710736
Alignment:
Q  419 tgggccgatcacttttgattcgagatcgagagctag 454  Q
    |||||||||||||||||||||||||||| |||||||    
T  20710771 tgggccgatcacttttgattcgagatcgggagctag 20710736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 55129436 - 55129498
Alignment:
Q  20 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgatttcccaacctcccct 82  Q
    ||||||||||| ||||| ||||  | ||||||||||||||| || | ||||||||||||||||    
T  55129436 tttttggttactgttccttcttcttagtcgtccaagcttctatgcgctttcccaacctcccct 55129498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 55129530 - 55129564
Alignment:
Q  96 taggtctgtaaagggtcgtgcagttgtggtggatc 130  Q
    |||||||| ||||||||||||||||||||||||||    
T  55129530 taggtctgcaaagggtcgtgcagttgtggtggatc 55129564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 30127242 - 30127307
Alignment:
Q  382 attgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcg 446  Q
    ||||||||||||  | ||||||||| ||||||||||  || ||||||| |||||||||||||||||    
T  30127242 attgaggggtgctctattgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcg 30127307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 545
Target Start/End: Original strand, 12129110 - 12129361
Alignment:
Q  294 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 393  Q
    |||||||||||  |||||||| |||||||| |||||| ||||||||||||||||| || ||| |||||||| |||||||||||||||  |||| ||||||    
T  12129110 ccaccttttctccgtcttcgaatttggcatcgggataatggtgggccgagtttggacaagtttaggtgtcttctctggtgggtcgtgagttgatgggtgc 12129209  T
Q  394 cgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgac-tttttggtggc 491  Q
    | | || |||||||||  |||||| |||| |||||||||||||||||||||||| |  |||         ||| |||||||||| ||| ||||||||| |    
T  12129210 cttattaatttgtgtc-agagtctgatggtccgatcacttttgattcgagatcggggacta-ctttttttatgcaagttcttttagacttttttggtgac 12129307  T
Q  492 gcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaac 545  Q
     |||| ||||||||||  ||||||||||||| || | |||||||||||||||||    
T  12129308 tcctctgacttatcggaagttgagtggtgggcgattctgatcgtttgatgcaac 12129361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 12128584 - 12128672
Alignment:
Q  90 gtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggt 178  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||  | |||||||||||    
T  12128584 gtcctttaggtctgtaaagggccgtgcagttgtggtggatccagtctctggatgatttaagatttttctcttccatgtagaaagacggt 12128672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 446
Target Start/End: Complemental strand, 7546561 - 7546465
Alignment:
Q  351 aggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcg 446  Q
    |||||| ||||||| ||||||||| |||||  |||||||||||| |||| ||| |||| | ||||||  ||| ||||||||||||||||||||||||    
T  7546561 aggttatggtgtctgctctggtggttcgtgagttgaggggtgccttttttattggtgttgagagtctggtggaccgatcacttttgattcgagatcg 7546465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 451
Target Start/End: Complemental strand, 40813972 - 40813812
Alignment:
Q  294 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggt 391  Q
    ||||||||||| || |||||| ||||||||  || |  |||||||||||||||  ||  |||||||||||||| |||| |||| ||||| ||||| ||||    
T  40813972 ccaccttttctctgccttcgaatttggcatctggtttatggtgggccgagtttttggataggttaaggtgtctgctctagtggttcgtgaattgaagggt 40813873  T
Q  392 gccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagc 451  Q
    ||| || ||||||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  40813872 gcctttatgatttgcgtcgggagtctggtgggccgatcacttttgattcgagatcgggagc 40813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 334 - 454
Target Start/End: Complemental strand, 17416660 - 17416537
Alignment:
Q  334 gtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcac 430  Q
    |||||||||||||  || |||||||||||||||||||| |||| |||||  ||||||||||||    ||||| |||||| ||| ||| ||||||||||||    
T  17416660 gtgggccgagtttttggacaggttaaggtgtctactctagtggttcgtgagttgaggggtgcctaaatgattggtgtcgagagcctagtgggccgatcac 17416561  T
Q  431 ttttgattcgagatcgagagctag 454  Q
    |||||||||||||||  |||||||    
T  17416560 ttttgattcgagatcaggagctag 17416537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 358 - 445
Target Start/End: Complemental strand, 37707480 - 37707392
Alignment:
Q  358 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatc 445  Q
    ||||||| ||||||||| |||||  |||||||||||| ||||| | ||||||||||||||  |||||||||||||||||||||||||||    
T  37707480 ggtgtctgctctggtggttcgtgagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 451
Target Start/End: Complemental strand, 26500414 - 26500306
Alignment:
Q  344 tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgag 442  Q
    ||||| ||||||||||||| | |||| |||| |||||  |||||||||||| |||||| ||||||||| |||| | |||| ||||| |||||||||||||    
T  26500414 tttggacaggttaaggtgtatgctctagtggttcgtgagttgaggggtgcctttttgacttgtgtcggaagtcttgtgggtcgatcgcttttgattcgag 26500315  T
Q  443 atcgagagc 451  Q
     ||| ||||    
T  26500314 gtcgggagc 26500306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 1799058 - 1799161
Alignment:
Q  316 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 413  Q
    |||||||| ||| |||||||||| |||||||  ||  |||||||||||||| ||| ||||| |||||  |||||||||||| |||||| ||||||  |||    
T  1799058 tttggcatcgggttattggtgggtcgagtttttggataggttaaggtgtctgctccggtggttcgtgagttgaggggtgcctttttgacttgtgtaagga 1799157  T
Q  414 gtct 417  Q
    ||||    
T  1799158 gtct 1799161  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Original strand, 26474854 - 26474885
Alignment:
Q  419 tgggccgatcacttttgattcgagatcgagag 450  Q
    ||||||||||||||||||||||||||||||||    
T  26474854 tgggccgatcacttttgattcgagatcgagag 26474885  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 10388515 - 10388611
Alignment:
Q  356 aaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagc 451  Q
    ||||||||| |||| |||  |||||  ||||||| || | |||||| ||| |||| ||||||  |||||||||||||||||||||||| ||| ||||    
T  10388515 aaggtgtctgctctagtgcttcgtgagttgagggatgtctttttgacttgcgtcgagagtcttgtgggccgatcacttttgattcgaggtcgggagc 10388611  T

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