View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_36 (Length: 269)

Name: NF1310_low_36
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_36
NF1310_low_36
[»] chr2 (3 HSPs)
chr2 (27-224)||(6531621-6531818)
chr2 (25-112)||(8420647-8420734)
chr2 (25-90)||(33439568-33439633)
[»] chr1 (2 HSPs)
chr1 (26-112)||(26518420-26518506)
chr1 (34-112)||(11830232-11830310)
[»] chr6 (1 HSPs)
chr6 (27-112)||(6468208-6468293)
[»] scaffold0026 (1 HSPs)
scaffold0026 (27-95)||(92838-92906)
[»] chr7 (5 HSPs)
chr7 (27-90)||(2677277-2677339)
chr7 (34-112)||(385355-385433)
chr7 (25-111)||(24935408-24935498)
chr7 (25-108)||(12286930-12287010)
chr7 (148-180)||(2677194-2677226)
[»] chr4 (3 HSPs)
chr4 (27-95)||(25809779-25809847)
chr4 (27-86)||(42391615-42391674)
chr4 (25-94)||(38216799-38216868)
[»] chr5 (2 HSPs)
chr5 (34-112)||(578468-578546)
chr5 (27-112)||(37073305-37073390)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 6531621 - 6531818
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaacnnnnnnntaaattg 126  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||    
T  6531621 attatactttttaaaattgaggagtaaaatgtggtgatttcttata-acattagaattcagtacaatcctgaaaattaacaacaacaaaaaaataaattg 6531719  T
Q  127 attttg-nnnnnnnnnnnnnnnggaattagatgagatttagggatttgtggattattattgtcaaattagaaattggaccaaatatccacgctaagaat 224  Q
    ||||||                ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6531720 attttgaacaaaaaaaaaaaagggaattagatgagatttagggatttgtggattaatattgtcaaattagaaattggaccaaatatccacgctaagaat 6531818  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 8420647 - 8420734
Alignment:
Q  25 agattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||  | |||||||||||||    
T  8420647 agattatactttttggaattgatgagtaaaatgtggtgatttctaataaacattagaatttagtacagtccatataattaacaacaac 8420734  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 33439633 - 33439568
Alignment:
Q  25 agattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtac 90  Q
    |||||||| ||||| |||||||||| ||||||||||| |||||||||| ||||||||||| |||||    
T  33439633 agattataatttttaaaattgaggaataaaatgtggtaatttcttataaacattagaatttagtac 33439568  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 26518506 - 26518420
Alignment:
Q  26 gattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||    |||||||||||||    
T  26518506 gattatactttttgaaattgaggagtaaaatgtgatgatttcttataaacattagaattcaatacaatccacgcaattaacaacaac 26518420  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 11830310 - 11830232
Alignment:
Q  34 tttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | |||| ||||||||    
T  11830310 tttttggaattgaggagtaaaatgtggtgatttcttataaacattagaattcagtacaatccaaagaattgacaacaac 11830232  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 6468208 - 6468293
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |||||| |||||| |  | |||||||||||||    
T  6468208 attatactttttgaaaatgaggagtaaaatatggtgatttcttataaacattacaattcattacaatacaaagaattaacaacaac 6468293  T

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Target: scaffold0026 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 92838 - 92906
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcc 95  Q
    |||||||||||||||||| ||||||||||| || |||||| ||||| ||||||||||| ||||||||||    
T  92838 attatactttttgaaattaaggagtaaaatatgatgattttttataaacattagaatttagtacaatcc 92906  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 2677339 - 2677277
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtac 90  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  2677339 attatactttttggaattgaggagtaaaatgtgat-atttcttataaacattagaattcagtac 2677277  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 385355 - 385433
Alignment:
Q  34 tttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    |||||| |||||||| ||||||| |||  |||||||||| ||||||||||| |||||||||| || |||||||||||||    
T  385355 tttttggaattgaggggtaaaatatggcaatttcttataaacattagaattaagtacaatccagagaattaacaacaac 385433  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 24935408 - 24935498
Alignment:
Q  25 agattatactttttgaaattgaggagtaaaatgtggtgatttctt----atatacattagaattcagtacaatcctgaaaattaacaacaa 111  Q
    |||||||| |||||| |||||||||||||||||||||||||||||    ||| ||||||| ||||| || ||| | |||||||||||||||    
T  24935408 agattataatttttggaattgaggagtaaaatgtggtgatttcttataaataaacattagcattcattataattcagaaaattaacaacaa 24935498  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 12287010 - 12286930
Alignment:
Q  25 agattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaa 108  Q
    |||||||| ||||||||||| || ||||||||   |||||||||||||   |||| ||||||| |||||||  |||||||||||    
T  12287010 agattataatttttgaaatttagaagtaaaat---gtgatttcttataattattataattcagaacaatccataaaattaacaa 12286930  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 2677226 - 2677194
Alignment:
Q  148 ggaattagatgagatttagggatttgtggatta 180  Q
    |||||||||||||||||||||||||| ||||||    
T  2677226 ggaattagatgagatttagggatttgaggatta 2677194  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 25809847 - 25809779
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcc 95  Q
    ||||||||||||| |||| |||||||||||||| |||||| ||||| ||||||||||| | ||||||||    
T  25809847 attatactttttggaattaaggagtaaaatgtgatgattttttataaacattagaatttaatacaatcc 25809779  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 42391615 - 42391674
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattca 86  Q
    |||||||||||||||||||||||||||||| | || |||||||||  |||||||||||||    
T  42391615 attatactttttgaaattgaggagtaaaatatagtcatttcttatgaacattagaattca 42391674  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 38216868 - 38216799
Alignment:
Q  25 agattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatc 94  Q
    |||||||| | |||| ||| |||||||||||||||||||||| |||||  ||||| |||||| |||||||    
T  38216868 agattatattctttggaatggaggagtaaaatgtggtgatttgttataagcattaaaattcaatacaatc 38216799  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 578468 - 578546
Alignment:
Q  34 tttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    |||||| || ||| ||||||||||||||||| ||||||| ||| || ||||||||||||||  || |||||||||||||    
T  578468 tttttggaactgaagagtaaaatgtggtgatctcttataaacactaaaattcagtacaatctagagaattaacaacaac 578546  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 37073305 - 37073390
Alignment:
Q  27 attatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 112  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| |||||  |||| ||| ||||   || |||||||||||||    
T  37073305 attatactttttagaattgacgagtaaaatgtggtgatttcttataaacattgtaatttagttcaatatagagaattaacaacaac 37073390  T

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