View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_37 (Length: 268)

Name: NF1310_low_37
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_37
NF1310_low_37
[»] chr5 (14 HSPs)
chr5 (31-257)||(8546992-8547221)
chr5 (31-261)||(9004393-9004623)
chr5 (31-174)||(8678760-8678903)
chr5 (31-171)||(2873480-2873620)
chr5 (30-190)||(8529952-8530112)
chr5 (31-230)||(8637907-8638109)
chr5 (31-174)||(9073673-9073816)
chr5 (31-176)||(2844029-2844174)
chr5 (31-163)||(8645252-8645384)
chr5 (30-245)||(8536522-8536737)
chr5 (31-176)||(2855862-2856007)
chr5 (30-174)||(1599241-1599385)
chr5 (46-171)||(2903986-2904111)
chr5 (75-126)||(31807159-31807210)
[»] scaffold0627 (1 HSPs)
scaffold0627 (31-257)||(5637-5860)
[»] chr7 (2 HSPs)
chr7 (30-174)||(48360794-48360938)
chr7 (31-174)||(35780863-35781006)
[»] chr4 (1 HSPs)
chr4 (31-190)||(9444114-9444273)
[»] chr6 (1 HSPs)
chr6 (31-157)||(16717350-16717476)
[»] chr1 (1 HSPs)
chr1 (105-167)||(5131600-5131662)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 8547221 - 8546992
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||    
T  8547221 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgtgaagtttaagcagaatgtgggc 8547122  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagt---tcatgatcgtctgcctcatctgctattacttttgctttattgcatcttcggctagcc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||   ||||||| ||||||||||||  || || ||||| |||||||||||||||  ||||||    
T  8547121 agtgaggtgagatggaagattatcaaaataagggcaaagttcatcatgattgtctgcctcatcaacttttcctttttctttattgcatcttcttctagcc 8547022  T
Q  228 ctaacaggggcaactgaatcctgttttctt 257  Q
    ||||||||||||| |||||||| |||||||    
T  8547021 ctaacaggggcaattgaatccttttttctt 8546992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 9004393 - 9004623
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||| ||||| |||||||||      
T  9004393 atttagcaaaatgtggttatgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagatgaagcagaatgtggtt 9004492  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcatgatcgtctgcctcatctgctattacttttgctttattgcatcttcggctagcccta 230  Q
    |||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||  || |  ||||||||||||||||  || || |||||||     
T  9004493 agtgaggtgagatggaagattagcaaagtaagggcaaagttcatgactttctgcctcatcaactttcccttttgctttattgcacttttggatagccctt 9004592  T
Q  231 acaggggcaactgaatcctgttttcttctca 261  Q
      ||||||||||||  ||| | |||||||||    
T  9004593 ggaggggcaactgagccctttcttcttctca 9004623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 8678760 - 8678903
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| | |||||||||    
T  8678760 atttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacatttacaaatgagaagagatttaatgggaagatgaagcaaaatgtgggc 8678859  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcat 174  Q
    | ||| ||| |||||||||||||||||||||||  |||||||||    
T  8678860 aatgatgtgtgatggaagattatcaaagtaaggataaagttcat 8678903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 2873620 - 2873480
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| |||||||||||| ||| |||||| | ||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||||||     
T  2873620 atttagcaaaatgtggttctgaaataagtgtattccaagttttgcacacacatctacacatgagaagagacttaatgggaagttgaagaagaatgtgggt 2873521  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagtt 171  Q
    ||| | |||||||||||||||||||||||||||||||||||    
T  2873520 agttaagtgagatggaagattatcaaagtaagggcaaagtt 2873480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 8529952 - 8530112
Alignment:
Q  30 gatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtggg 129  Q
    ||||||||||| |||  |||||||||||||||||||||||  ||||| ||||||||||||||||||| |||||| |  |||||| |||||||||||||||    
T  8529952 gatttagcaaattgtgattctgaaataattgttttccaaactttgcacacacatttacaaatgagaacagacttaaatggaagtcgaaggagaatgtggg 8530051  T
Q  130 cagtgaggtgagatggaagattatcaaagtaagggcaaagttcatgatcgtctgcctcatc 190  Q
    ||||||||||||| ||||| |||||||| ||||||||||| ||| ||   |||||||||||    
T  8530052 cagtgaggtgagacggaagtttatcaaaataagggcaaagctcacgactctctgcctcatc 8530112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 8637907 - 8638109
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||| ||||     
T  8637907 atttagcaaaatgtggttccgaaatcattgttttccaaatcttgcacacacatttacaaatgagaagagacttaatggaaagttgaagcagaatttgggt 8638006  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagt---tcatgatcgtctgcctcatctgctattacttttgctttattgcatcttcggctagcc 227  Q
     |||| ||| |||||||||||||||||||| ||  |||||   ||||||   ||||  |||||  || |  |||||||||||||||||||| ||||||||    
T  8638007 ggtgatgtgggatggaagattatcaaagtatggaaaaagtccatcatgactttctgattcatcaactctcccttttgctttattgcatcttaggctagcc 8638106  T
Q  228 cta 230  Q
    |||    
T  8638107 cta 8638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 9073816 - 9073673
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| |||||||||||| | |||||||||| ||||| |||||||||||||||||||||| ||||| ||||||| |||| ||||| | |||    
T  9073816 atttagcaaaatgtggttctgaaataagtcttttccaaattttgcacacacatttacaaatgagaagaggcttgacgggaagtcgaagcagaatattggc 9073717  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcat 174  Q
    ||||||||||||||||||||| |||||  ||||| |||||||||    
T  9073716 agtgaggtgagatggaagattgtcaaaaaaagggaaaagttcat 9073673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 2844174 - 2844029
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| ||||||| |||| ||| |||||||| ||||| |||||| |||| |||||||||||||| |||||||| |  |||||||||||||     
T  2844174 atttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatgggaagctttaggagaatgtgggt 2844075  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcatga 176  Q
    ||| |  |||||||||||||||||||||||||||||||||||||||    
T  2844074 agttaattgagatggaagattatcaaagtaagggcaaagttcatga 2844029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 8645252 - 8645384
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| || |||||||| ||||| |  ||||||||    
T  8645252 atttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacattcacaaatgagaagagatttaatgggaagatgaagcaacatgtgggc 8645351  T
Q  131 agtgaggtgagatggaagattatcaaagtaagg 163  Q
    | ||| ||| |||||||||||||||||||||||    
T  8645352 aatgatgtgtgatggaagattatcaaagtaagg 8645384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 8536522 - 8536737
Alignment:
Q  30 gatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtggg 129  Q
    |||||||||||||||  ||||||||| | |||||||||||| ||||| ||| |||||||||||||||| ||||| |  ||||||||||| |||||||| |    
T  8536522 gatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatgagaagcgacttaaatggaagttgaagcagaatgtgag 8536621  T
Q  130 cagtgaggtgagatggaagattatcaaagtaagggcaaagttcatgatcgtctgcctcatctgctattacttttgctttattgcatcttcggctagccct 229  Q
    || | | |||||| |||||||||||||| ||||||||||||| |||    |||||||||||  || |  |||||| |||||||| |||| ||| ||||||    
T  8536622 caataacgtgagacggaagattatcaaaataagggcaaagttgatggctttctgcctcatcaactttcccttttgatttattgcgtctttggccagccct 8536721  T
Q  230 aacaggggcaactgaa 245  Q
    | ||||||||| ||||    
T  8536722 agcaggggcaattgaa 8536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 2856007 - 2855862
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| ||||||| |||| ||| |||||||| ||||| |||||| |||| |||||||||||||| |||||||| |  |||||||||||||     
T  2856007 atttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatgggaagctttaggagaatgtgggt 2855908  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcatga 176  Q
    ||| |  |||||||||| ||||||||||||||||||||||||||||    
T  2855907 agttaattgagatggaaaattatcaaagtaagggcaaagttcatga 2855862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 1599385 - 1599241
Alignment:
Q  30 gatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtggg 129  Q
    |||||||||||||||  ||||||||| | |||||||||||| ||||| ||| |||||||||||||||| ||||| || ||||||||||| |||||| |||    
T  1599385 gatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatgagaagcgacttaataggaagttgaagcagaatgcggg 1599286  T
Q  130 cagtgaggtgagatggaagattatcaaagtaagggcaaagttcat 174  Q
    |||||| |||||||| ||||||||||||  ||||| ||| |||||    
T  1599285 cagtgacgtgagatgaaagattatcaaaaaaagggaaaacttcat 1599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 2904111 - 2903986
Alignment:
Q  46 gttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggcagtgaggtgagatgg 145  Q
    |||||||||||| ||| |||||||| ||||| |||||| |||| |||||||||||||| |||||||| |  |||||||| | || ||| | |||| ||||    
T  2904111 gttctgaaataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatgggaagctttaggagaatttcggtagttaagtgaaatgg 2904012  T
Q  146 aagattatcaaagtaagggcaaagtt 171  Q
    |||||||||||||||||| |||||||    
T  2904011 aagattatcaaagtaaggacaaagtt 2903986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 31807210 - 31807159
Alignment:
Q  75 caaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgt 126  Q
    |||||||||||||| |||| || |||||||||||||||| |||| |||||||    
T  31807210 caaacacatttacatatgataacagacttgatgggaagtcgaagtagaatgt 31807159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 5637 - 5860
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||| |||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |     
T  5637 atttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacaaatgagaagagacttgatgggaagttgaagaaaaatgtgagt 5736  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcatgatcgtctgcctcatctgctattacttttgctttattgcatcttcggctagcccta 230  Q
     |||||||| ||||||||| ||||||| |||   |||  |||||||   |||||||| ||  || |  ||||||||||||||||||||||||||||||||    
T  5737 ggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaactttcccttttgctttattgcatcttcggctagcccta 5833  T
Q  231 acaggggcaactgaatcctgttttctt 257  Q
    | ||||| || |||| ||| |||||||    
T  5834 ataggggtaattgaaccctcttttctt 5860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 48360938 - 48360794
Alignment:
Q  30 gatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtggg 129  Q
    ||||||||||| |||  ||||||||| | |||||||||||| ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  48360938 gatttagcaaattgtgattctgaaatcagtgttttccaaattttgcacacagatttacaaataagaagagacttaatgggaagttgaaggagaatgtggg 48360839  T
Q  130 cagtgaggtgagatggaagattatcaaagtaagggcaaagttcat 174  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||    
T  48360838 cagtgaggtgatatggaagattatcaaaataagggcaaagttcat 48360794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 35780863 - 35781006
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||| ||  |||||||||| |||||||| || ||  |||| |||||| |||||||||||||||| || |||||||||||||| | |||||||||    
T  35780863 atttagcaaattgcggttctgaaatcattgtttttcagattatgcacacacatctacaaatgagaagagattttatgggaagttgaagcaaaatgtgggc 35780962  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcat 174  Q
     |||||||| ||||||||||||||||| |||||| |||| ||||    
T  35780963 ggtgaggtgggatggaagattatcaaaataagggtaaaggtcat 35781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 9444114 - 9444273
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||| |||  ||||||||| |||||||||||||  ||||| ||| ||||||||||||||| |||||| |  |||||| ||||||||||||||||    
T  9444114 atttagcaaattgtgattctgaaatcattgttttccaaactttgcacacagatttacaaatgagaacagacttaaatggaagtcgaaggagaatgtgggc 9444213  T
Q  131 agtgaggtgagatggaagattatcaaagtaagggcaaagttcatgatcgtctgcctcatc 190  Q
    |||||||||||| |||||||||||||| ||||||||||| ||| ||   |||||||||||    
T  9444214 agtgaggtgagacggaagattatcaaaataagggcaaagctcacgactctctgcctcatc 9444273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 16717350 - 16717476
Alignment:
Q  31 atttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgggaagttgaaggagaatgtgggc 130  Q
    |||||||||||||   ||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  16717350 atttagcaaaatgcgattctgaaatcattcttttccaaattttgcacacacatttacaaatgagaagagacttgatgggaagttgaagcaaaatgtgggc 16717449  T
Q  131 agtgaggtgagatggaagattatcaaa 157  Q
     |||||||| ||||||||| |||||||    
T  16717450 ggtgaggtgggatggaagaatatcaaa 16717476  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 5131600 - 5131662
Alignment:
Q  105 atgggaagttgaaggagaatgtgggcagtgaggtgagatggaagattatcaaagtaagggcaa 167  Q
    |||||||||| ||| | |||||||||||||||||| ||||||||||||||||| |||||||||    
T  5131600 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 5131662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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