View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_4 (Length: 523)
Name: NF1310_low_4
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 135 - 523
Target Start/End: Complemental strand, 46544001 - 46543613
Alignment:
| Q |
135 |
tgtacaatcccaccaccatatcgcatcttatgacagtcatggtcaaaaaatcaaaagcctatatgaatgaatgaacgattaaaatggaataacatgaagn |
234 |
Q |
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| T |
46544001 |
tgtacaatcccaccaccatatcgcatcttatgacagtcatggtcaaaaaatcaaaagcctatatgaatgaatgaacgattaaaatggaataacatgaaga |
46543902 |
T |
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| Q |
235 |
nnnnnnnnnnnnnnnnnnnnnnngtgtttgatggatgggaataaagatgtgagtcaaataagaaccaaattgatgaagactcatttatcactttctttgt |
334 |
Q |
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| T |
46543901 |
aaaaaacactgaaaaggaaaaaagtgtttgatggatgggaataaagatgtgagtcaattaagaaccaaattgatgaagactcatttatcactttctttgt |
46543802 |
T |
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| Q |
335 |
ttcccagtttcagtcgcaacaccgaaaacactatcaaatcaatggtcacttcttaacattgtctctttttcagaaaccaaaccaaactttgttgaataat |
434 |
Q |
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| T |
46543801 |
ttcccagtttcagtcgcaacaccgaaaacactatcaaatcaatggtcacttcttaacattgtctctttttcagaaaccaaaccaaactttgttgaataat |
46543702 |
T |
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| Q |
435 |
agggtgggagagatgatttggtgcaatgtaatgggcagagggcaccatgatttgtttcaacatttggattctgaattggagctacgtat |
523 |
Q |
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| T |
46543701 |
aaggtgggagagatgatttggtgcaatgtaatgggcagagggcaccatgatttgtttcaacatttggattctgaattggagctacgtat |
46543613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 46544118 - 46544064
Alignment:
| Q |
18 |
aaagtgaaaaataaatagagacagtggcactatatatatctgttgaatttaaacc |
72 |
Q |
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| T |
46544118 |
aaagtgaaaaataaatagagacagtggcactatatatatctgttgaatttaaacc |
46544064 |
T |
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