View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_40 (Length: 251)
Name: NF1310_low_40
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21493466 - 21493706
Alignment:
| Q |
1 |
ccggatgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcataggaatt |
100 |
Q |
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| T |
21493466 |
ccggatgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcatcggaatt |
21493565 |
T |
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| Q |
101 |
gttgtacctgaccgtgtcaaccctccagattactacattgacattttagaaggaataataaaaccaagtgcaggctcgggagtgacccataaacaactac |
200 |
Q |
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| T |
21493566 |
gttgtacctgaccgtgtcaaccctccagattactacattgacattttagaaggaataataaaaccaagtgcaggctcaggagtgacccataaacaactac |
21493665 |
T |
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| Q |
201 |
cagttagatggatgcttcataatggatattctgtgcctatg |
241 |
Q |
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| T |
21493666 |
cagttagatggatgcttcataatggatattctgtgcctatg |
21493706 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 41041994 - 41041900
Alignment:
| Q |
5 |
atgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcataggaat |
99 |
Q |
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| T |
41041994 |
atgtttgatgatatagtatttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaat |
41041900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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