View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_44 (Length: 213)
Name: NF1310_low_44
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 19858908 - 19859087
Alignment:
| Q |
1 |
acagaaaagaagtgtaagttcattaaaatgtagacctcatgctgagattccggatcatgcttcttgtgacactgttacttttggaaaatcttgcgatgat |
100 |
Q |
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| T |
19858908 |
acagaaaagaagtgtaagttcattaaaatgtagaccacatgctgagattccggatcatgctgcttgtgacactgttacttttggaaaatcttgtgatgat |
19859007 |
T |
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| Q |
101 |
cgttggaaaaactacaagggtggtaatattgttgatgaggatgttccttccggttctattcctaaacttttgaaaactat |
180 |
Q |
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| T |
19859008 |
ggttggaaaaactacaacggtggtaatattgttgatgaggatgttccttctggttcaattcctaaacttttgaaaactat |
19859087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 19948791 - 19948859
Alignment:
| Q |
117 |
agggtggtaatattgttgatgaggatgttccttccggttctattcctaaacttttgaaaactatatcct |
185 |
Q |
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| T |
19948791 |
agggtgataaaattgtcgatgatgatgctccttctggttctattcctaaacttttgaaaactatgtcct |
19948859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 19854555 - 19854647
Alignment:
| Q |
76 |
tacttttggaaaatcttgcgatgatcgttggaaaaactacaagggtggtaatattgttgatgaggatgttccttccggttctattcctaaact |
168 |
Q |
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| T |
19854555 |
tactattggaaaatctagtgatgatggttttaaaactaacaagggtgataatattgttgatgatgatgttccttctgattttgttcctaaact |
19854647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 24839112 - 24839074
Alignment:
| Q |
142 |
tgttccttccggttctattcctaaacttttgaaaactat |
180 |
Q |
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| T |
24839112 |
tgttccttctggttctattcctaaagttttgaaaactat |
24839074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 22688937 - 22688784
Alignment:
| Q |
16 |
aagttcattaaaatgtagacctcatgctgagattccggatcatgcttcttgtgacactgttacttttggaaaatcttgcgatgatcgttggaaaaacta- |
114 |
Q |
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| T |
22688937 |
aagttcatcaaaatatagacctcatgccgagattcctaaacttgttggttgtggcactgttacttttggaaaatctagcgatgatggtt-taaaaacgag |
22688839 |
T |
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| Q |
115 |
caagggtggtaatattgttgatgaggatgttccttccggttctattcctaaactt |
169 |
Q |
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| T |
22688838 |
caacggtgatagtattgttggcgaggatgttccttctgattttattcctaaactt |
22688784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 22688452 - 22688400
Alignment:
| Q |
135 |
atgaggatgttccttccggttctattcctaaacttttgaaaactatatcctct |
187 |
Q |
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| T |
22688452 |
atgatgatgatccttctggttcaattcctaaactattgaaaactatatcctct |
22688400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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