View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_low_6 (Length: 495)

Name: NF1310_low_6
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_low_6
NF1310_low_6
[»] chr8 (30 HSPs)
chr8 (44-127)||(37392543-37392626)
chr8 (44-124)||(18726619-18726699)
chr8 (44-127)||(12710636-12710719)
chr8 (44-127)||(25837902-25837985)
chr8 (44-127)||(35818421-35818504)
chr8 (44-127)||(38364072-38364155)
chr8 (44-125)||(1554353-1554434)
chr8 (44-117)||(3050000-3050073)
chr8 (44-125)||(32660932-32661013)
chr8 (44-127)||(16313504-16313587)
chr8 (44-117)||(26601945-26602018)
chr8 (44-127)||(38132734-38132817)
chr8 (46-124)||(10896217-10896295)
chr8 (44-126)||(41228712-41228794)
chr8 (44-125)||(26062135-26062216)
chr8 (44-123)||(42755858-42755937)
chr8 (44-117)||(18298103-18298176)
chr8 (44-117)||(40197083-40197156)
chr8 (44-125)||(7317364-7317445)
chr8 (44-117)||(7931230-7931303)
chr8 (44-122)||(21137134-21137212)
chr8 (44-123)||(33444627-33444706)
chr8 (44-127)||(35394381-35394464)
chr8 (44-118)||(41432731-41432805)
chr8 (44-117)||(38437445-38437518)
chr8 (126-198)||(40530483-40530556)
chr8 (44-127)||(5020487-5020573)
chr8 (44-117)||(29421496-29421569)
chr8 (44-125)||(34672325-34672406)
chr8 (44-117)||(43871973-43872046)
[»] chr7 (37 HSPs)
chr7 (44-126)||(45045617-45045699)
chr7 (44-127)||(33378833-33378916)
chr7 (44-127)||(9946987-9947070)
chr7 (44-127)||(11329984-11330067)
chr7 (44-127)||(27248284-27248367)
chr7 (44-127)||(48314113-48314196)
chr7 (44-126)||(48160589-48160671)
chr7 (44-125)||(8419588-8419669)
chr7 (44-125)||(27213854-27213935)
chr7 (47-124)||(38544188-38544265)
chr7 (44-125)||(39554174-39554255)
chr7 (44-117)||(48341353-48341426)
chr7 (44-124)||(40212880-40212960)
chr7 (44-124)||(44566036-44566116)
chr7 (44-127)||(28904183-28904266)
chr7 (44-123)||(43949236-43949315)
chr7 (44-126)||(35488187-35488269)
chr7 (44-117)||(25924644-25924717)
chr7 (44-125)||(27419223-27419304)
chr7 (44-127)||(16825351-16825434)
chr7 (44-123)||(45265049-45265128)
chr7 (44-127)||(9814215-9814294)
chr7 (44-125)||(25098060-25098141)
chr7 (44-123)||(41632365-41632444)
chr7 (52-109)||(38396381-38396438)
chr7 (44-117)||(45448933-45449006)
chr7 (44-109)||(34930481-34930547)
chr7 (44-127)||(11000693-11000777)
chr7 (57-123)||(45723211-45723277)
chr7 (44-127)||(25045615-25045697)
chr7 (44-122)||(6656226-6656304)
chr7 (44-126)||(41684020-41684102)
chr7 (44-117)||(6656480-6656552)
chr7 (44-125)||(18824136-18824218)
chr7 (58-125)||(31921747-31921813)
chr7 (47-122)||(44820248-44820323)
chr7 (44-122)||(37534105-37534183)
[»] chr5 (22 HSPs)
chr5 (225-415)||(16597504-16597691)
chr5 (44-126)||(19065503-19065585)
chr5 (44-125)||(4765559-4765640)
chr5 (44-125)||(12970529-12970610)
chr5 (44-128)||(28602546-28602630)
chr5 (44-127)||(22935909-22935992)
chr5 (44-125)||(555705-555786)
chr5 (44-125)||(14206820-14206901)
chr5 (44-125)||(18412200-18412281)
chr5 (44-117)||(6091706-6091779)
chr5 (44-117)||(11855662-11855735)
chr5 (44-125)||(27481348-27481429)
chr5 (44-125)||(29543014-29543095)
chr5 (44-122)||(32535928-32536006)
chr5 (44-124)||(36703865-36703945)
chr5 (44-103)||(8646412-8646471)
chr5 (44-117)||(8406885-8406958)
chr5 (46-127)||(42012176-42012257)
chr5 (44-122)||(20962581-20962659)
chr5 (44-122)||(26637045-26637123)
chr5 (44-85)||(27481000-27481041)
chr5 (46-86)||(36978209-36978249)
[»] scaffold0006 (2 HSPs)
scaffold0006 (44-127)||(201916-201999)
scaffold0006 (44-117)||(143604-143677)
[»] chr3 (31 HSPs)
chr3 (44-127)||(20297784-20297867)
chr3 (44-127)||(40908256-40908339)
chr3 (44-125)||(24574566-24574647)
chr3 (44-125)||(26849013-26849094)
chr3 (44-127)||(11239117-11239200)
chr3 (44-126)||(44952299-44952381)
chr3 (44-124)||(6231501-6231581)
chr3 (44-122)||(1099189-1099267)
chr3 (44-125)||(8476307-8476388)
chr3 (44-124)||(9320448-9320528)
chr3 (44-124)||(28124436-28124516)
chr3 (44-124)||(47114857-47114937)
chr3 (46-117)||(33217920-33217991)
chr3 (44-127)||(31435920-31436003)
chr3 (44-127)||(48339754-48339837)
chr3 (49-125)||(20414464-20414540)
chr3 (44-127)||(43132154-43132237)
chr3 (226-304)||(35231749-35231827)
chr3 (44-105)||(31611004-31611065)
chr3 (62-127)||(43715305-43715370)
chr3 (44-116)||(53165733-53165805)
chr3 (44-109)||(10822733-10822798)
chr3 (44-103)||(46359943-46360002)
chr3 (44-125)||(27094006-27094088)
chr3 (44-124)||(12228256-12228336)
chr3 (44-114)||(1246912-1246982)
chr3 (44-125)||(2565459-2565540)
chr3 (44-122)||(40584591-40584669)
chr3 (44-126)||(55435390-55435472)
chr3 (58-99)||(9320405-9320446)
chr3 (44-85)||(26849194-26849235)
[»] chr1 (43 HSPs)
chr1 (44-127)||(2430488-2430571)
chr1 (44-125)||(3572564-3572645)
chr1 (44-127)||(1597339-1597422)
chr1 (44-127)||(6978762-6978845)
chr1 (44-126)||(9115829-9115911)
chr1 (44-125)||(2632844-2632925)
chr1 (44-117)||(36361774-36361847)
chr1 (44-125)||(46666700-46666781)
chr1 (226-417)||(35306584-35306771)
chr1 (44-124)||(39930449-39930529)
chr1 (46-125)||(4683373-4683452)
chr1 (44-123)||(25789755-25789834)
chr1 (44-127)||(39329600-39329683)
chr1 (44-127)||(52630765-52630848)
chr1 (44-122)||(32824914-32824992)
chr1 (44-125)||(6911485-6911566)
chr1 (44-125)||(47037449-47037530)
chr1 (44-125)||(49822916-49822997)
chr1 (44-124)||(20260086-20260166)
chr1 (44-127)||(8332006-8332089)
chr1 (44-122)||(9831872-9831950)
chr1 (44-125)||(12190176-12190257)
chr1 (44-117)||(38964686-38964759)
chr1 (44-124)||(14788715-14788795)
chr1 (44-125)||(5518503-5518584)
chr1 (44-125)||(35187448-35187529)
chr1 (44-117)||(51445087-51445160)
chr1 (54-125)||(5806290-5806361)
chr1 (44-122)||(50190767-50190845)
chr1 (44-125)||(48916021-48916102)
chr1 (61-125)||(32202330-32202394)
chr1 (44-124)||(1007739-1007819)
chr1 (44-107)||(37436638-37436701)
chr1 (44-125)||(29091658-29091739)
chr1 (44-117)||(30241001-30241074)
chr1 (44-127)||(52699463-52699546)
chr1 (44-123)||(11014442-11014521)
chr1 (44-123)||(13931885-13931964)
chr1 (44-117)||(9011168-9011241)
chr1 (44-117)||(13653843-13653916)
chr1 (44-117)||(20504996-20505069)
chr1 (48-117)||(31806763-31806832)
chr1 (44-117)||(52186053-52186126)
[»] chr4 (36 HSPs)
chr4 (44-126)||(45747794-45747876)
chr4 (44-124)||(34049597-34049677)
chr4 (44-127)||(43723259-43723342)
chr4 (44-125)||(40435895-40435976)
chr4 (44-125)||(48879320-48879401)
chr4 (44-124)||(27762899-27762979)
chr4 (44-124)||(48518891-48518971)
chr4 (44-127)||(27555405-27555488)
chr4 (44-127)||(39498820-39498903)
chr4 (44-127)||(39502159-39502242)
chr4 (44-127)||(39730290-39730373)
chr4 (44-127)||(41859044-41859127)
chr4 (44-123)||(47670357-47670436)
chr4 (44-125)||(6279920-6280001)
chr4 (44-125)||(23686782-23686863)
chr4 (44-125)||(35999681-35999762)
chr4 (44-127)||(18405231-18405314)
chr4 (44-127)||(25932436-25932519)
chr4 (44-127)||(42773943-42774026)
chr4 (44-126)||(55967998-55968080)
chr4 (44-125)||(39835306-39835387)
chr4 (44-124)||(13229989-13230069)
chr4 (53-117)||(27942747-27942811)
chr4 (44-127)||(936121-936204)
chr4 (44-127)||(45596263-45596346)
chr4 (44-125)||(25916034-25916113)
chr4 (44-122)||(41744222-41744300)
chr4 (44-124)||(32953518-32953598)
chr4 (52-131)||(18931756-18931835)
chr4 (44-125)||(50672907-50672985)
chr4 (44-109)||(8322240-8322305)
chr4 (44-125)||(30415897-30415978)
chr4 (64-117)||(34237427-34237480)
chr4 (44-117)||(10400812-10400885)
chr4 (50-127)||(9327242-9327319)
chr4 (50-127)||(9374001-9374078)
[»] chr6 (11 HSPs)
chr6 (44-125)||(7053569-7053650)
chr6 (44-125)||(2657691-2657772)
chr6 (44-125)||(8029324-8029405)
chr6 (44-124)||(1317009-1317089)
chr6 (44-127)||(14171004-14171087)
chr6 (44-117)||(18897912-18897985)
chr6 (44-121)||(16968916-16968993)
chr6 (44-125)||(7344082-7344163)
chr6 (44-127)||(6705762-6705845)
chr6 (44-117)||(345837-345911)
chr6 (88-124)||(10246222-10246258)
[»] chr2 (40 HSPs)
chr2 (44-125)||(346344-346425)
chr2 (44-125)||(39995130-39995211)
chr2 (44-127)||(21737397-21737480)
chr2 (44-127)||(42674658-42674741)
chr2 (44-125)||(2521666-2521747)
chr2 (44-125)||(6171782-6171863)
chr2 (44-125)||(6571678-6571759)
chr2 (44-125)||(11071596-11071677)
chr2 (44-124)||(9733846-9733926)
chr2 (44-117)||(5770117-5770190)
chr2 (44-125)||(14777497-14777578)
chr2 (44-125)||(37533943-37534024)
chr2 (44-127)||(4559550-4559633)
chr2 (44-127)||(17965974-17966057)
chr2 (47-117)||(638587-638657)
chr2 (44-122)||(2050857-2050935)
chr2 (44-126)||(20426481-20426563)
chr2 (44-122)||(37192513-37192591)
chr2 (44-126)||(41729128-41729210)
chr2 (44-117)||(28311704-28311777)
chr2 (44-128)||(40950855-40950939)
chr2 (52-127)||(34356697-34356772)
chr2 (44-123)||(41750520-41750599)
chr2 (44-117)||(37233420-37233493)
chr2 (44-125)||(27357962-27358043)
chr2 (44-125)||(45409241-45409322)
chr2 (44-124)||(1988302-1988382)
chr2 (57-117)||(26310273-26310333)
chr2 (44-109)||(14253513-14253578)
chr2 (44-117)||(14832801-14832874)
chr2 (44-117)||(18713664-18713737)
chr2 (44-125)||(40570011-40570092)
chr2 (49-117)||(13760941-13761009)
chr2 (44-125)||(14403232-14403313)
chr2 (44-122)||(24499433-24499509)
chr2 (44-127)||(45694179-45694262)
chr2 (44-125)||(25455015-25455096)
chr2 (130-198)||(32453229-32453298)
chr2 (44-117)||(39819687-39819760)
chr2 (49-109)||(11763386-11763446)
[»] scaffold0189 (1 HSPs)
scaffold0189 (44-117)||(28959-29032)
[»] scaffold0702 (1 HSPs)
scaffold0702 (44-128)||(3561-3645)
[»] scaffold0662 (1 HSPs)
scaffold0662 (44-128)||(4459-4543)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 37392626 - 37392543
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  37392626 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaatacaccctaa 37392543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 18726699 - 18726619
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  18726699 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 18726619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 12710636 - 12710719
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  12710636 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 12710719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 25837902 - 25837985
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  25837902 acttgtaacaaacataggcatgtacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 25837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 35818504 - 35818421
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  35818504 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 35818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 38364072 - 38364155
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  38364072 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 38364155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 1554434 - 1554353
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  1554434 acttgtaacaaacatagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 1554353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 3050000 - 3050073
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  3050000 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 3050073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 32661013 - 32660932
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||    
T  32661013 acttgtaacaaacataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 32660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 16313587 - 16313504
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  16313587 acttgtaacaaacataggtatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 16313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 26602018 - 26601945
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  26602018 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataatttgaaacaaa 26601945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 38132817 - 38132734
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  38132817 acttgtaacaaacatagacatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 38132734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 10896295 - 10896217
Alignment:
Q  46 ttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||| ||||||    
T  10896295 ttgtaacaaacataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacaccc 10896217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 41228794 - 41228712
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||||    
T  41228794 acttgtaacaaacgtaggcatatacattcctaccattttattcccgggaattaacaattataacttgaaacaaacacacccta 41228712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 26062135 - 26062216
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  26062135 acttgtaacaaacataggaatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 26062216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 42755858 - 42755937
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    ||||||||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||| |||||    
T  42755858 acttgtaactaacataggcatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacacacc 42755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 18298103 - 18298176
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  18298103 acttgtaacaaacataggtatatacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaa 18298176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 40197156 - 40197083
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  40197156 acttataacaaacataaacatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaa 40197083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 7317364 - 7317445
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |  ||||||||| |||||||| ||||||| |||||||    
T  7317364 acttgtaacaaacataggcatatatattcctatcattttatttttgaaaatcaacaaatataacttgaaacaaacacaccct 7317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 7931230 - 7931303
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||| |||||||||||  |||||||||| ||||||||||||| || |||||||||||||||||||| |||||||    
T  7931230 acttataacaaacatatacatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaa 7931303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 21137212 - 21137134
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||||||||||||||| ||| |||| ||||||||  | ||||||||||| |||||||| ||||||| ||||    
T  21137212 acttgtaacaaacataggcatatatatttctattattttattctcaggaatcaacaaatataacttcaaacaaacacac 21137134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 33444706 - 33444627
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    ||||||||||||||||| |||||| |||  ||||||||||||  | ||||||||||| |||||||| ||||||| |||||    
T  33444706 acttgtaacaaacatagacatatatatttttatcattttattctcaggaatcaacaaatataacttgaaacaaacacacc 33444627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 35394381 - 35394464
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||| ||| || ||||||||||  || ||||||| || |||||||| ||||||| | |||||||    
T  35394381 acttgtaacaaacatagacatatatatttctttcattttattctcgtgaatcaataaatataacttgaaacaaacaaaccctaa 35394464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 41432731 - 41432805
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaat 118  Q
    ||||||||||||||||  ||| |  ||||||||||||||||| || |||||| || | |||||||||||||||||    
T  41432731 acttgtaacaaacataaacatgtgtattcctatcattttattcccaggaatccacgaatataacttaaaacaaat 41432805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 38437445 - 38437518
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||  ||||  ||||||||| |||||||| | |||||  |||| ||||||||||||||||    
T  38437445 acttgtaacaaacatagatatatgtattcctatcgttttattttcaggaatatacaaatataacttaaaacaaa 38437518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 40530556 - 40530483
Alignment:
Q  126 aatgttatataacattgaccaataaagatgtgtcatgtaagaaggtct-aagagaaaagagaaaatatatgcat 198  Q
    ||||||||||||||||||| ||| ||| |||| ||| || |||||||| |||| ||||||||||| ||||||||    
T  40530556 aatgttatataacattgactaatgaaggtgtgccatataggaaggtctaaagaaaaaagagaaaagatatgcat 40530483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 5020573 - 5020487
Alignment:
Q  44 acttgtaacaaacataggcatatacattcct---atcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||| ||||||| ||||||| ||||||   ||||||||||| ||  |||||||||| |||||||| ||||||| |||| ||||    
T  5020573 acttgtaagaaacatatgcatatatattcctcctatcattttattcccatgaatcaacaaatataacttgaaacaaacacactctaa 5020487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 29421569 - 29421496
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||  |||||| ||| |||||||||||||  |  |||||||||| ||||| || |||||||    
T  29421569 acttgtaacaaacataaacatatatatttctatcattttattctcatgaatcaacaaatataatttgaaacaaa 29421496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 34672325 - 34672406
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||| |||  || ||||||| |||  ||||||||||||| | ||||||||||| || ||||| ||||||| |||||||    
T  34672325 acttgtaataaatgtaagcatatatatttttatcattttattttcaggaatcaacaaatacaacttcaaacaaacacaccct 34672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 43872046 - 43871973
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||||||| ||  ||  ||| |||||||||||  ||||| | ||||||||||| |||||||    
T  43872046 acttgtaacaaacataggcatgtatgtttttatgattttatttccaagaatctataattataacttgaaacaaa 43871973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 45045617 - 45045699
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  45045617 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttaaaacaaacacacccta 45045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 33378833 - 33378916
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  33378833 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 33378916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 9947070 - 9946987
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  9947070 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaaaaattataactttaaacaaacacaccctaa 9946987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 11329984 - 11330067
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  11329984 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11330067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 27248284 - 27248367
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  27248284 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 27248367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 48314113 - 48314196
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  48314113 acttctaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 48314196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 48160671 - 48160589
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  48160671 acttgtaacaaacatagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 48160589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 8419669 - 8419588
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  8419669 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 27213935 - 27213854
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  27213935 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 27213854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 38544188 - 38544265
Alignment:
Q  47 tgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  38544188 tgtaataaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 38544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 39554174 - 39554255
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  39554174 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39554255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 48341353 - 48341426
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  48341353 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 48341426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 40212880 - 40212960
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  40212880 acttgtaacaaacataggcatatacattcctatcattttattcccgcgaatcaacaattataacttgaaacaaacacaccc 40212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 44566036 - 44566116
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  44566036 acttgtaacaaacatagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacacaccc 44566116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 28904266 - 28904183
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  28904266 acttgtaacaaacatagacatatacatttctatcattttattctcgggaatcaacaattataacttaaaacaaacacaccctaa 28904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 43949236 - 43949315
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  43949236 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 43949315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 35488269 - 35488187
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| ||||||||    
T  35488269 acttgtaacaaacataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacacccta 35488187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 25924717 - 25924644
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  25924717 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaa 25924644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 27419304 - 27419223
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  27419304 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcagcaattataacttgaaacaaacacaccct 27419223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 16825434 - 16825351
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| |  ||||| |||||||||||||| ||||||| |||||||||    
T  16825434 acttgtaacaaacataggcatatacatttctatcattttattcctaggaattaacaattataacttgaaacaaacacaccctaa 16825351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 45265128 - 45265049
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||| |||||    
T  45265128 acttataacaaacataggcatatacattccaatcattttattcccgagaatcaacaattataacttgaaacaaacacacc 45265049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 9814294 - 9814215
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  9814294 acttgtaacaaaca----catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 9814215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 25098060 - 25098141
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||  |||||| ||||||||||| ||||||| |||||||    
T  25098060 acttgtaacaaacatgggcatatacattcctatcattttattcccgaaaatcaaaaattataacttgaaacaaacacaccct 25098141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 41632444 - 41632365
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||||||| ||||||||||||||||||| |||||||||||||  | |||||||||||||||||||| ||||||| |||||    
T  41632444 acttgtaataaacataggcatatacatttctatcattttattctcaggaatcaacaattataacttgaaacaaacacacc 41632365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 38396438 - 38396381
Alignment:
Q  52 caaacataggcatatacattcctatcattttatttccgggaatcaacaattataactt 109  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  38396438 caaacatagacatatacattcctatcattttattcccgggaatcaacaattataactt 38396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 45448933 - 45449006
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||    
T  45448933 acttgtaacaaacatagacatctacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaa 45449006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 34930547 - 34930481
Alignment:
Q  44 acttgtaacaaa-cataggcatatacattcctatcattttatttccgggaatcaacaattataactt 109  Q
    |||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  34930547 acttgtaacaaaacataggcatatacatttctatcattttattcccaggaatcaacaattataactt 34930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 11000693 - 11000777
Alignment:
Q  44 acttgtaacaaacataggc-atatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||||| ||||| |||  ||||||||||||||| ||||||||||  |||||||| ||||||| |||||||||    
T  11000693 acttgtaacaaacataggctatatatatttatatcattttatttccaggaatcaacatatataacttgaaacaaacacaccctaa 11000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 45723211 - 45723277
Alignment:
Q  57 ataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    ||||||||||| |||||||||||||||||  ||||||||||||| |||||||| ||||||| |||||    
T  45723211 ataggcatatatattcctatcattttattctcgggaatcaacaaatataacttgaaacaaacacacc 45723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 25045697 - 25045615
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||| ||||||| ||||||||| ||||| | ||  |||||||||| |||||||| ||||||| |||||||||    
T  25045697 acttgtaacaaacatatgcatatatattcctatcttttta-tccccagaatcaacaaatataacttgaaacaaacacaccctaa 25045615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 6656304 - 6656226
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||   ||||||||| |||||||| ||||||| ||||    
T  6656304 acttataacaaacataggtatatatattcatatcattttatttccaaaaatcaacaaatataacttgaaacaaacacac 6656226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 41684102 - 41684020
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    ||||||||||||||||  |||||| ||| ||||||| |||||  | ||||||||||| |||||||| ||||||| ||||||||    
T  41684102 acttgtaacaaacataaacatatatatttctatcatattattctcaggaatcaacaaatataacttgaaacaaacacacccta 41684020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 6656552 - 6656480
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||   ||||||||| |||||||| |||||||    
T  6656552 acttgtaacaaacataggcatatatattcatatca-tttatttccaaaaatcaacaaatataacttgaaacaaa 6656480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 18824136 - 18824218
Alignment:
Q  44 acttgtaacaaacataggcatataca-ttcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||| | || ||||||||||||| ||   ||||||||| || ||||| ||||||| |||||||    
T  18824136 acttgtaacaaacataggcatatatattttctatcattttattcccaaaaatcaacaaatacaacttgaaacaaacacaccct 18824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 31921813 - 31921747
Alignment:
Q  58 taggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||| ||| |||||||||||||||| | ||| ||||| |||||||| ||||||| |||||||    
T  31921813 taggcatatatatttctatcattttatttcc-gaaatgaacaaatataacttgaaacaaacacaccct 31921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 44820248 - 44820323
Alignment:
Q  47 tgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    ||||||||||| |  || ||||||| ||||||||||||| | |  |||||||||||||||||| ||||||| ||||    
T  44820248 tgtaacaaacacatacaaatacatttctatcattttattcctgaaaatcaacaattataacttgaaacaaacacac 44820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 37534183 - 37534105
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||||||| |||| ||  ||  ||| ||||||||||| |||||| ||||||||||| | ||||||| ||||    
T  37534183 acttgtaacaaacatatgcatgtatgtttttatgattttatttccaggaatctacaattataacatgaaacaaacacac 37534105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 225 - 415
Target Start/End: Complemental strand, 16597691 - 16597504
Alignment:
Q  225 aggaggtatgcaatgaaatggaaccactcaattccattattactcttttacgcctattttattacttcatcaatgtactgttgattc-ctttcttttgct 323  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||  | | |||||||||||||||| |||||   |||||| | | |||  |||    
T  16597691 aggaggtatgcaatggaatggaaccacttaattctattattactcttttatcctttttttattacttcatcactgtac---tgattctcctgcttccgct 16597595  T
Q  324 caagtgttacgttgtgcacatatttcttcttgttccgtttttatgtttgttgtttgtaaatctcagatgattgtttcatttcaaccaatttt 415  Q
    | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |   |||||| | ||||||| |||||| ||||||||||    
T  16597594 ctagtgttacgctgtgcacatatttcttcttgttcagtttttatgtttgttgtcttgcaatctc-gttgattgtatcatttaaaccaatttt 16597504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 19065585 - 19065503
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  19065585 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 19065503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 4765640 - 4765559
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  4765640 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 4765559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 12970610 - 12970529
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  12970610 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 12970529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 28602546 - 28602630
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaat 128  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  28602546 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaat 28602630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 22935992 - 22935909
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  22935992 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 22935909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 555786 - 555705
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  555786 acttgtaacaaacatagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 14206901 - 14206820
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  14206901 acttgtaacaaacataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 14206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 18412200 - 18412281
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||| |||||||    
T  18412200 acttgtaacaaacataggcatatacattcctatcattttattcccaggaatcaataattataacttgaaacaaacacaccct 18412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 6091706 - 6091779
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||| |||||||    
T  6091706 acttgtaacaaacataggcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaa 6091779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 11855735 - 11855662
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||| |||||||    
T  11855735 acttgtaacaaacataggcatatacattcctatcattttattctcaggaatcaacaattataacttgaaacaaa 11855662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 27481348 - 27481429
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||| ||||||| |||||||    
T  27481348 acttgtaacaaacataggcatatacattcctatcattttatttccaaaaatcaaaaattataacttgaaacaaacacaccct 27481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 29543095 - 29543014
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||||||| ||||||| |||||||    
T  29543095 acttgtaacaaacatagacatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 29543014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 32535928 - 32536006
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    ||||||||||||||||  |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  32535928 acttgtaacaaacataaacatatacatttctatcattttattcctgggaatcaacaattataacttaaaacaaacacac 32536006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 36703865 - 36703945
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||  |||||||||||||||||| ||||||| ||||||    
T  36703865 acttgtaacaaacatagacatatacatttctatcattttattcccgataatcaacaattataacttgaaacaaacacaccc 36703945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 8646471 - 8646412
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaatta 103  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  8646471 acttgtaacaaacatagacatatacattcctatcattttattcccgggaatcaacaatta 8646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 8406885 - 8406958
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||| |||||||| ||||||||||||||||||||  ||  |||||||||||||||||| |||||||    
T  8406885 acttgtaacaaatataggcatgtacattcctatcattttattctcgaaaatcaacaattataacttgaaacaaa 8406958  T

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Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 42012257 - 42012176
Alignment:
Q  46 ttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||| |||||  ||| ||||||||||||| ||| |||||||||| |||| ||| ||||||| |||||||||    
T  42012257 ttgtaacaaacatagacatatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaacaaacacaccctaa 42012176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 20962581 - 20962659
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    ||||||||||||||||||||  |  ||||||||||||||||| ||  ||||| || | |||||||| ||||||| ||||    
T  20962581 acttgtaacaaacataggcacgtgtattcctatcattttattcccaagaatctacgaatataacttgaaacaaacacac 20962659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 26637123 - 26637045
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||| |||| |||||| | | ||||||||||||| ||   ||||||||| |||||||| ||||||| ||||    
T  26637123 acttgtaacaaatatagacatatataattctatcattttattcccattaatcaacaaatataacttgaaacaaacacac 26637045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 27481000 - 27481041
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatt 85  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  27481000 acttgtaacaaacatagacatacatattcctatcattttatt 27481041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 36978249 - 36978209
Alignment:
Q  46 ttgtaacaaacataggcatatacattcctatcattttattt 86  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  36978249 ttgtaacaaacatagacatatatatttctatcattttattt 36978209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 201916 - 201999
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  201916 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 201999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 143604 - 143677
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||| ||  |||||| ||| |||||||||||||  | ||||||||||| | |||||| |||||||    
T  143604 acttgtaacaaacgtatacatatatatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaa 143677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 20297784 - 20297867
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  20297784 acttgtaacaaacataggcatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 20297867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 40908256 - 40908339
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  40908256 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 40908339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 24574566 - 24574647
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  24574566 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 26849013 - 26849094
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  26849013 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 26849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 11239200 - 11239117
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  11239200 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11239117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 44952299 - 44952381
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  44952299 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 44952381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 6231581 - 6231501
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||||    
T  6231581 acttgtaacaaacataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccc 6231501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 1099189 - 1099267
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  1099189 acttgtaacaaacatagggatatacatttctatcattttattcccgggaatcaacaattataacttaaaacaaacacac 1099267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 8476388 - 8476307
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  8476388 acttgtaacaaacacaggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8476307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 9320528 - 9320448
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  9320528 acttgtaacaaacataagtatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28124516 - 28124436
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  28124516 acttataacaaacataggcatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccc 28124436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 47114937 - 47114857
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  47114937 acttgtaacaaacataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 47114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 33217991 - 33217920
Alignment:
Q  46 ttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  33217991 ttgtaacaaacataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaa 33217920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 31436003 - 31435920
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| |||||||||||||  | ||||||||||| |||||||| ||||||| |||||||||    
T  31436003 acttgtaacaaacataggcatatacatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacacaccctaa 31435920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 48339837 - 48339754
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||| ||||||| ||| |||||    
T  48339837 acttgtaacaaacataggcatatacatttatatcattttattcccggaaatcaacaattataacttgaaacaaacacatcctaa 48339754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 20414540 - 20414464
Alignment:
Q  49 taacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||||||| |||||||    
T  20414540 taacaaacataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccct 20414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 43132237 - 43132154
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||| |||||||| ||||||||  || |||||||||| |||||||| ||||||| |||||||||    
T  43132237 acttgtaacaaacataggcatatatattcctattattttattctcgagaatcaacaaatataacttgaaacaaacacaccctaa 43132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 35231827 - 35231749
Alignment:
Q  226 ggaggtatgcaatgaaatggaaccactcaattccattattactcttttacgcctattttattacttcatcaatgtactg 304  Q
    |||||||||||||| ||| |||||||| ||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  35231827 ggaggtatgcaatggaatagaaccacttaattctattattactcttttatccctattttattacttcatcactgtactg 35231749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 31611065 - 31611004
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattata 105  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  31611065 acttgtaacaaacatagacatatacattccaatcattttattcccgggaatcaacaattata 31611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 43715370 - 43715305
Alignment:
Q  62 catatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  43715370 catatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaa 43715305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 53165805 - 53165733
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaa 116  Q
    |||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||| |||||||| ||||||    
T  53165805 acttgtaacaaacataagcatatatattcctatcattttatttatgggaatcaacaaatataacttgaaacaa 53165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 10822798 - 10822733
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataactt 109  Q
    ||||||||||||||||| |||||||| | ||||||||||||| |||| ||||||||| ||||||||    
T  10822798 acttgtaacaaacatagacatatacacttctatcattttattcccggaaatcaacaaatataactt 10822733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 46359943 - 46360002
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaatta 103  Q
    |||||||||||||||||| ||||||||||||||||||||||| |  | ||||||||||||    
T  46359943 acttgtaacaaacataggtatatacattcctatcattttattccaagaaatcaacaatta 46360002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 27094006 - 27094088
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttattt-ccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||| ||||||||||||||||||| ||| | |||||||| ||| ||||||| | |||  ||||||||||||||||||||||||    
T  27094006 acttataacaaacataggcatatatatttcaatcatttttttttccgggaacctacacatataacttaaaacaaatacaccct 27094088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 12228336 - 12228256
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||| ||||||||||||||| ||| |||||||||||||  | ||||| ||||| ||||  |||||||||| ||||||    
T  12228336 acttgtaataaacataggcatatatatttctatcattttattcgcaggaattaacaactatattttaaaacaaacacaccc 12228256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 1246982 - 1246912
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaac 114  Q
    |||||||||||||||| ||||||  ||| ||||||||||||| ||| |||||||||| |||| ||| ||||    
T  1246982 acttgtaacaaacataagcatatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaac 1246912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 2565540 - 2565459
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||| ||| ||||| ||| |||| |||||||| |   |||||||||| ||||||||||||| || |||||||    
T  2565540 acttgtaacaaacacaggtatatatatttctattattttattcctaagaatcaacaaatataacttaaaacgaacacaccct 2565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 40584591 - 40584669
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||  |||||||| ||||| ||||  ||| ||||||||  | |||||| |||| |||||||||||||||||||||    
T  40584591 acttgtagaaaacatagacatatgcatttttatgattttattctcaggaatctacaaatataacttaaaacaaatacac 40584669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 55435472 - 55435390
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||  | ||  | ||||||||||||||||| || || ||| ||||  ||||||| ||||||||||||||||    
T  55435472 acttgtaacaaacatgagaatgcatattcctatcattttattcccaggtatctacaaaaataacttgaaacaaatacacccta 55435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 9320446 - 9320405
Alignment:
Q  58 taggcatatacattcctatcattttatttccgggaatcaaca 99  Q
    |||| ||||||||||||||||||||||| ||| |||||||||    
T  9320446 taggtatatacattcctatcattttattcccgagaatcaaca 9320405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 26849235 - 26849194
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatt 85  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  26849235 acttgtaacaaacatagacatatatatttctatcattttatt 26849194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 2430488 - 2430571
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  2430488 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 2430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 3572645 - 3572564
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  3572645 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 3572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 1597422 - 1597339
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  1597422 acttgtaacaaacataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 1597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 6978762 - 6978845
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  6978762 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 6978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 9115829 - 9115911
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  9115829 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 9115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 2632844 - 2632925
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  2632844 acttgtaacaaacataggcatatacattcctattattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 36361774 - 36361847
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  36361774 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 36361847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 46666700 - 46666781
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  46666700 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 46666781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 417
Target Start/End: Complemental strand, 35306771 - 35306584
Alignment:
Q  226 ggaggtatgcaatgaaatggaaccactcaattccattattactcttttacgcctattttattacttcatcaatgtactgttgattcctttcttttgctca 325  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||||  |||||||||||||||||||| ||||||| | ||||  | ||| ||||      
T  35306771 ggaggtatgcaatggaatggaaccacttaattctattattactcttttatccctattttattacttcatcactgtactgattattc--tgcttctgct-t 35306675  T
Q  326 agtgttacgttgtgcacatatttcttcttgttccgtttttatgtttgttgtttgtaaatctcagatgattgtttcatttcaaccaattttat 417  Q
    ||||||| | ||||| | ||||||||||| ||| ||||||||||||||||| |   |||||||  ||||| |  ||||||||||||||||||    
T  35306674 agtgttatgctgtgctcgtatttcttctttttcagtttttatgtttgttgtcttacaatctca-ttgattataccatttcaaccaattttat 35306584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 39930449 - 39930529
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  39930449 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 39930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 4683452 - 4683373
Alignment:
Q  46 ttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||    
T  4683452 ttgtaacaaacataggcatatacattcctatcattttatttctgggaatcaacaattataaattgaaacaaagacaccct 4683373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 25789755 - 25789834
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  25789755 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 25789834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 39329600 - 39329683
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  39329600 acttgtaacaaacatagacatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 39329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 52630765 - 52630848
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||||    
T  52630765 acttgtaacaaacatagacatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccctaa 52630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 32824914 - 32824992
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||    
T  32824914 acttgtaacaaacataggcatatacattcctattattttatttccggaaatcaacaattataacttgaaacaaacacac 32824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 6911485 - 6911566
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  6911485 acttgtaacaaacataggcatatacattcttatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 6911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 47037449 - 47037530
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  47037449 acttgtaacaaacataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 47037530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 49822997 - 49822916
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  49822997 acttgtaacaaacataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 49822916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 20260166 - 20260086
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  20260166 acttgtaacaaacataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 20260086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 8332006 - 8332089
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  8332006 acttgcaacaaacataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 8332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 9831950 - 9831872
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||| ||||    
T  9831950 acttgtaacaaacataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacac 9831872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 12190257 - 12190176
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||| ||||||| |||||||    
T  12190257 acttgtaacaaacataggcatgtacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaacacaccct 12190176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 38964759 - 38964686
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  38964759 acttgtaacaaacataagcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaa 38964686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 14788715 - 14788795
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||| ||||||    
T  14788715 acttgtaacaaacatagacatatacattcctattattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 14788795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 5518584 - 5518503
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||| |||||||| ||||||| |||||||    
T  5518584 acttgtaacaaacataggcatatatatttctatcattttattcctgggaatcaacaaatataacttgaaacaaacacaccct 5518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 35187448 - 35187529
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||    
T  35187448 acttgtaacaaacataaacatatacatttctatcattttattcccgggaatcaacaattataacttgaaaaaaacacaccct 35187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 51445160 - 51445087
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||| |||||||||  |||||||||||| ||||||||||||||||||||||| |||||||    
T  51445160 acttgtaacaaacataggtatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaa 51445087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 5806361 - 5806290
Alignment:
Q  54 aacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  5806361 aacaaaggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 50190845 - 50190767
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| ||| ||||||| ||||    
T  50190845 acttgtaacaaacgtaggcatatacattcctagcattttatttccggaaattaacaattatatcttgaaacaaacacac 50190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 48916102 - 48916021
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| |||||||||||||  | ||||||||||| |||||||| ||| ||| |||||||    
T  48916102 acttgtaacaaacataggcatatacatttctatcattttattctctggaatcaacaaatataacttgaaataaacacaccct 48916021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 32202394 - 32202330
Alignment:
Q  61 gcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  32202394 gcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 32202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 1007739 - 1007819
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||| ||| |||||| |||| ||||||||||||  ||||||||||||| |||||||| ||||||| ||||||    
T  1007739 acttgtaacaaacctagacatatatattcatatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccc 1007819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 37436701 - 37436638
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataac 107  Q
    |||||||||||||||| |||||||||||||||||||||||||  || |||||||||| ||||||    
T  37436701 acttgtaacaaacatatgcatatacattcctatcattttattctcgtgaatcaacaaatataac 37436638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 29091658 - 29091739
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||| |||  ||||||||||||  | ||||||||||| |||||||| ||||||| |||||||    
T  29091658 acttgtaacaaacatagacatatatatttttatcattttattatcaggaatcaacaaatataacttgaaacaaacacaccct 29091739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 30241001 - 30241074
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||   ||||||||| |||||||| |||||||    
T  30241001 acttgtaacaaacataggcatatatatttctatcattttattaccaaaaatcaacaaatataacttgaaacaaa 30241074  T

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Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 52699546 - 52699463
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||||||| |  ||||||||||||||||| || |||||| || | |||||||| |||||||  ||||||||    
T  52699546 acttgtaacaaacataggcatgtgtattcctatcattttattcccaggaatctacgaatataacttgaaacaaacgcaccctaa 52699463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 11014521 - 11014442
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    ||||||||||||||||| ||| || ||| ||||||||||||| || |||||| |||  |||||||| |||||||| ||||    
T  11014521 acttgtaacaaacatagacatgtatatttctatcattttattcccaggaatctacatatataacttgaaacaaatgcacc 11014442  T

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Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 13931964 - 13931885
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||||||||||||||||||||||  |||  ||| |||||||| |  |||||| |||| |||||||| ||||||| |||||    
T  13931964 acttgtaacaaacataggcatatgtatttttatgattttattcctaggaatctacaaatataacttcaaacaaacacacc 13931885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 9011241 - 9011168
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||| |||||||| ||| || |||||||||||||||||| |  ||||| || | |||||||| |||||||    
T  9011241 acttgtaataaacatagacatgtatattcctatcattttattttcaagaatctacgaatataacttgaaacaaa 9011168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 13653843 - 13653916
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||| ||  |||||| ||| |||||||||||||  | ||||||||||| | |||||| |||||||    
T  13653843 acttgtaacaaacgtatacatatatatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaa 13653916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 20505069 - 20504996
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||| ||| || ||| |||||||||||||  | | |||| |||| ||||| ||||||||||    
T  20505069 acttgtaacaaacatagacatgtatatttctatcattttattctcagaaatctacaaatataatttaaaacaaa 20504996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 31806832 - 31806763
Alignment:
Q  48 gtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||| |||| || ||| |||||||||||||  | |||||| |||| |||||||| |||||||    
T  31806832 gtaacaaacataagcatgtatatttctatcattttattctcaggaatctacaaatataacttgaaacaaa 31806763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 52186126 - 52186053
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||| |||| |||||| ||| |||||||||||||    | ||||||||| |||||||| |||||||    
T  52186126 acttgtaacaaatatagacatatatatttctatcattttattataagaaatcaacaaatataacttgaaacaaa 52186053  T

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Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 45747876 - 45747794
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  45747876 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 45747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 34049677 - 34049597
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  34049677 acttgtaacaaacatagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 34049597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 43723259 - 43723342
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  43723259 acttgtaacaaacataggcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaa 43723342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 40435895 - 40435976
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  40435895 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 40435976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 48879320 - 48879401
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  48879320 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 48879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 27762979 - 27762899
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  27762979 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 27762899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 48518971 - 48518891
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||    
T  48518971 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 48518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 27555405 - 27555488
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  27555405 acttgtaacaaacatagacatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 27555488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 39498820 - 39498903
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  39498820 acttgtaacaaacataaacatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39498903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 39502159 - 39502242
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  39502159 acttgtaacaaacataaacatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39502242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 39730373 - 39730290
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  39730373 acttgtaacaaacatagacatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 39730290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 41859127 - 41859044
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  41859127 acttgtaacaaacataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 41859044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 47670357 - 47670436
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  47670357 acttgtaacaaacataggcatatacatttctatcattttatttccaggaatcaacaattataacttgaaacaaacacacc 47670436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 6280001 - 6279920
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  6280001 acttgtaacaaacatagacatatacattcatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 6279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 23686782 - 23686863
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  23686782 acttgtaacaaacataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 23686863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 35999681 - 35999762
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  35999681 acttgtaacaaacataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 35999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 18405314 - 18405231
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  18405314 acttgtaacaaacataggcatatacatttctataattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 18405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 25932436 - 25932519
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||||||| ||||||| |||||||||    
T  25932436 acttgtaacaaacataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacaccctaa 25932519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 42773943 - 42774026
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||||||| |||||||||    
T  42773943 acttgtaacaaacataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccctaa 42774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 55968080 - 55967998
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  55968080 acttgtaacaaacagagacatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 55967998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 39835387 - 39835306
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  39835387 acttgtaacaaacatatgcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 13230069 - 13229989
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||| ||||||| ||||||    
T  13230069 acttgtaacaaacataggcatatacatttctatcattttattcccgggaataaaaaattataacttgaaacaaacacaccc 13229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 27942747 - 27942811
Alignment:
Q  53 aaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27942747 aaacatagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaa 27942811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 936121 - 936204
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  936121 acttgtaacaaacatagggatatatattccaatcattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 936204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 45596263 - 45596346
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||  |||||||||||||||||| |||||||  ||||||||    
T  45596263 acttgtaacaaacataggcatatacatttctatcattttattcccgaaaatcaacaattataacttgaaacaaacgcaccctaa 45596346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 25916113 - 25916034
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||    
T  25916113 acttgtaacaaacataggcata--cattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccct 25916034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 41744300 - 41744222
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||| ||| ||||    
T  41744300 acttgtaacaaacataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaataaacacac 41744222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 32953518 - 32953598
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||| | ||||| ||||||    
T  32953518 acttgtaacaaagataggcatatacattcctatcattttgttcctgggaatcaacaattataacttgagacaaacacaccc 32953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 18931756 - 18931835
Alignment:
Q  52 caaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaatgtt 131  Q
    ||||||||| |||||||||||||||||||||||| || | |||||||||||||||||| ||||||| |||| ||||||||    
T  18931756 caaacatagacatatacattcctatcattttattcccagaaatcaacaattataacttgaaacaaacacactctaatgtt 18931835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 50672985 - 50672907
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||  |||||||||||||| |||||||    
T  50672985 acttgtaacaaacatagacatatacattcctatcatttta-ttcccggaatcaacaat--taacttaaaacaaacacaccct 50672907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 8322240 - 8322305
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataactt 109  Q
    ||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||||||||    
T  8322240 acttgtaacaaacatagacatatacatttctatcattttattcccaggaatcaacaattataactt 8322305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 30415897 - 30415978
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||| || |||||| |||||||||||||||||  ||||||||||||| |||||||| ||||||| |||||||    
T  30415897 acttgtaacaaacacagacatatatattcctatcattttattatcgggaatcaacaaatataacttgaaacaaacacaccct 30415978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 34237480 - 34237427
Alignment:
Q  64 tatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  34237480 tatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaa 34237427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 10400885 - 10400812
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||| |||||||| |||||||||| ||||||||||||| ||   ||||||||| |||||||| |||||||    
T  10400885 acttgtaataaacatagacatatacatttctatcattttattcccaaaaatcaacaaatataacttgaaacaaa 10400812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 9327319 - 9327242
Alignment:
Q  50 aacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||| |||||| ||| ||| ||||||||||   ||||||||||| |||||||| ||| ||| |||||||||    
T  9327319 aacaaacatagacatatatatttctaacattttatttttaggaatcaacaaatataacttgaaataaaaacaccctaa 9327242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 9374078 - 9374001
Alignment:
Q  50 aacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||| |||||| ||| ||| ||||||||||   ||||||||||| |||||||| ||| ||| |||||||||    
T  9374078 aacaaacatagacatatatatttctaacattttatttttaggaatcaacaaatataacttgaaataaaaacaccctaa 9374001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 7053650 - 7053569
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  7053650 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 7053569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 2657691 - 2657772
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  2657691 acttgtaacaaacataggtatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 8029324 - 8029405
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  8029324 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8029405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 1317009 - 1317089
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  1317009 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 1317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 14171004 - 14171087
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  14171004 acttgtaacaaacataggcatatagattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 14171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 18897912 - 18897985
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  18897912 acttgtaacaaacataggcatatacatttctatcactttatttccgggaatcaacaattataacttgaaacaaa 18897985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 16968916 - 16968993
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaataca 121  Q
    ||||||||||||||||| |||||| |||||||||||||||||  | |||||||||||||||||||| |||||||||||    
T  16968916 acttgtaacaaacatagacatatagattcctatcattttattctcaggaatcaacaattataacttgaaacaaataca 16968993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 7344163 - 7344082
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||| |||  |||||||||| || |||| || |||||||    
T  7344163 acttgtaacaaatataggcatatacattcctatcattttattctcggaaatttacaattataatttgaaacgaacacaccct 7344082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 6705845 - 6705762
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||| ||| ||| ||||||||| |   |||||||||| |||||||| ||||||| |||||||||    
T  6705845 acttgtaacaaacatagacatatatatttctaccattttattccaatgaatcaacaaatataacttgaaacaaacacaccctaa 6705762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 345911 - 345837
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttcc-gggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||| ||| |  ||||||||||||||||||||  |||||| || | ||||||||||||||||    
T  345911 acttgtaacaaacatagacatgtgtattcctatcattttatttcctaggaatctacgaatataacttaaaacaaa 345837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 10246258 - 10246222
Alignment:
Q  88 cgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  10246258 cgggaatcaacaattataacttgaaacaaacacaccc 10246222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 346425 - 346344
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  346425 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 39995211 - 39995130
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  39995211 acttgtaacaaacataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 21737480 - 21737397
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  21737480 acttgtaacaaacatagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 21737397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 42674741 - 42674658
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  42674741 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 42674658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 2521666 - 2521747
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  2521666 acttgtaacaaacataggcatatacattccaatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 2521747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 6171782 - 6171863
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| |||||||    
T  6171782 acttgtaacaaacataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccct 6171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 6571678 - 6571759
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  6571678 acttgtaacaaacataggcatatatattcctatcattttatttccggaaatcaacaaatataactttaaacaaatacaccct 6571759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 11071596 - 11071677
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  11071596 acttgtaacaaacataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 11071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 9733926 - 9733846
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  9733926 acttgtaacaaacataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 5770190 - 5770117
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  5770190 acttgtaacaaacataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaa 5770117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 14777578 - 14777497
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| |||||||    
T  14777578 acttgtaacaaacataggcatatacattccaatcattttattcccgggaatcaacaattataaattgaaacaaacacaccct 14777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 37533943 - 37534024
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  37533943 acttgtaacaaacatagacatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 37534024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 4559550 - 4559633
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    |||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||| ||||||| |||||||||    
T  4559550 acttgtaacaaacataggcatatacattccaatcattttattcttgggaatcaacaattataacttgaaacaaacacaccctaa 4559633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 17965974 - 17966057
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  17965974 acttgtaacaaacatagacatatacattccaatcattttattatcgggaatcaacaattataacttgaaacaaacacaccctaa 17966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 638587 - 638657
Alignment:
Q  47 tgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  638587 tgtaacaaacatagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaa 638657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 2050857 - 2050935
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  2050857 acttgtaacaaacataggtatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacac 2050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 20426563 - 20426481
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||| ||||||||    
T  20426563 acttgtaacaaacataggcatataaattcctatcattttattcccgggaatcaacaaatataatttgaaacaaacacacccta 20426481  T

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Target: chr2; HSP #18
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 37192513 - 37192591
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  37192513 acttgtaacaaacatagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 37192591  T

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Target: chr2; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 41729210 - 41729128
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacccta 126  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||||||    
T  41729210 acttgtaacaaacataggcatatccattcctatcattttattcccgggaataaaaaattataacttgaaacaaacacacccta 41729128  T

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Target: chr2; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 28311777 - 28311704
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  28311777 acttgtaacaaacataggcatatatattcctatcattttattcccgggaatcaacaaatataacttgaaacaaa 28311704  T

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Target: chr2; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 40950939 - 40950855
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaat 128  Q
    |||||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||    
T  40950939 acttgtaacaaacataagcatatatatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaat 40950855  T

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Target: chr2; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 34356772 - 34356697
Alignment:
Q  52 caaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  34356772 caaacatagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 34356697  T

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Target: chr2; HSP #23
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 41750520 - 41750599
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacacc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||||||| ||||||| |||||    
T  41750520 acttgtaacaaacataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacacc 41750599  T

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Target: chr2; HSP #24
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 37233420 - 37233493
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||| |||||||    
T  37233420 acttgtaacaaacataggcatatatgttcctatcattttattcccgggaatcaacaaatataacttgaaacaaa 37233493  T

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Target: chr2; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 27358043 - 27357962
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| ||||||||| |||||||||||||  | |||||||||||| |||||||| ||||||| |||||||    
T  27358043 acttgtaacaaacatagacatatacatccctatcattttatacctgggaatcaacaaatataacttgaaacaaacacaccct 27357962  T

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Target: chr2; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 45409241 - 45409322
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||| ||||||||||||||||||||||||||||||||    |||||||||||| |||||||| ||||||| |||||||    
T  45409241 acttgtaaaaaacataggcatatacattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacacaccct 45409322  T

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Target: chr2; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 1988302 - 1988382
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccc 124  Q
    ||||||||||||||||||||| || ||| ||||||||||||| || | ||||||||| |||||||| ||||||| ||||||    
T  1988302 acttgtaacaaacataggcatgtatatttctatcattttattcccagaaatcaacaaatataacttcaaacaaacacaccc 1988382  T

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Target: chr2; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 26310273 - 26310333
Alignment:
Q  57 ataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  26310273 atagacatatacatttctatcattttattcccgggaatcaacaattataactttaaacaaa 26310333  T

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Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 14253513 - 14253578
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataactt 109  Q
    ||||||||||||||||| |||||| ||| ||||||||||||| ||| |||||||||| ||||||||    
T  14253513 acttgtaacaaacatagacatatatatttctatcattttattcccgagaatcaacaaatataactt 14253578  T

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Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 14832801 - 14832874
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||| ||||||||||||||||||| ||| ||||||||||||| |  ||||||||||| |||||||| |||||||    
T  14832801 acttttaacaaacataggcatatatatttctatcattttattcctaggaatcaacaaatataacttgaaacaaa 14832874  T

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Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 18713737 - 18713664
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| |||||||| |||||||    
T  18713737 acttgtaacaaacataggcatatatatttatatcattttattaccatgaatcaacaaatataacttgaaacaaa 18713664  T

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Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 40570011 - 40570092
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||||||| ||  ||  ||| |||||||| || |||||| ||||||||||||| ||||||| |||||||    
T  40570011 acttgtaacaaacataggcatgtatgtttttatgattttattcccaggaatctacaattataacttgaaacaaacacaccct 40570092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 13760941 - 13761009
Alignment:
Q  49 taacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    ||||||||||||| | ||| ||||||||||||||||| |||  |||||| ||||||||||| |||||||    
T  13760941 taacaaacataggtacatatattcctatcattttattcccgaaaatcaataattataacttgaaacaaa 13761009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 14403313 - 14403232
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    |||||||| |||  ||||||| || |||  ||||||||||||||| ||||||||||| || ||||| ||||||| |||||||    
T  14403313 acttgtaataaatgtaggcatgtatatttttatcattttatttccaggaatcaacaaatacaacttcaaacaaacacaccct 14403232  T

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Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 24499433 - 24499509
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacac 122  Q
    |||| ||||||||||||  ||||| ||| |||||||||||||||   |||||||||| |||||||| ||||||| ||||    
T  24499433 acttataacaaacatag--atatatatttctatcattttatttctatgaatcaacaaatataacttgaaacaaacacac 24499509  T

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Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 45694179 - 45694262
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaa 127  Q
    ||||||||||||||||| ||| |  ||||||||||||||||| || | |||| || | |||||||| |||||||  ||||||||    
T  45694179 acttgtaacaaacatagacatgtgtattcctatcattttattcccagaaatctacgaatataacttgaaacaaacgcaccctaa 45694262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 25455015 - 25455096
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccct 125  Q
    ||||||||||||||||| |||||  |||  ||| ||||||||  | |||||| |||| |||||||| ||||||| |||||||    
T  25455015 acttgtaacaaacatagacatatgtatttttatgattttattctcaggaatctacaaatataacttgaaacaaacacaccct 25455096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 32453298 - 32453229
Alignment:
Q  130 ttatataacattgaccaataaagatgtgtcatgtaagaaggtct-aagagaaaagagaaaatatatgcat 198  Q
    ||||||||||||||||||| |||||||| ||  |||||| || | ||||||||||||| || ||||||||    
T  32453298 ttatataacattgaccaatgaagatgtgacacataagaatgtgtaaagagaaaagagataaaatatgcat 32453229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 39819687 - 39819760
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||  |||   || ||||||||| | |||||| |||| |||||||| |||||||    
T  39819687 acttgtaacaaacataggcatatgtattttcatgattttattttcaggaatctacaaatataacttgaaacaaa 39819760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 11763446 - 11763386
Alignment:
Q  49 taacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataactt 109  Q
    |||||||||||| |||||| ||||||||||||| ||| |||  || |||||| ||||||||    
T  11763446 taacaaacatagacatatatattcctatcatttcattcccgaaaaacaacaaatataactt 11763386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 29032 - 28959
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||    
T  29032 acttgtaacaaacataggcatatacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaa 28959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 3645 - 3561
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaat 128  Q
    |||||||||||||||||||||||| |||  ||| |||||||| |  | |||| |||| |||||||| ||||||| ||||||||||    
T  3645 acttgtaacaaacataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacaccctaat 3561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 4459 - 4543
Alignment:
Q  44 acttgtaacaaacataggcatatacattcctatcattttatttccgggaatcaacaattataacttaaaacaaatacaccctaat 128  Q
    |||||||||||||||||||||||| |||  ||| |||||||| |  | |||| |||| |||||||| ||||||| ||||||||||    
T  4459 acttgtaacaaacataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacaccctaat 4543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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