View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_low_9 (Length: 491)
Name: NF1310_low_9
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 51 - 491
Target Start/End: Original strand, 36532993 - 36533433
Alignment:
| Q |
51 |
atactgatggtcaaattacaatcttctcgaatgggatttaaacttcgtaccttgaggttacgaggtttaattcttaccacttagctgacacttcatggat |
150 |
Q |
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| T |
36532993 |
atactgatggtcaaattacaattgtctcgaatgggatttaaacttcgtaccttgaggttacgaagtttgattcttaccacttagctgacacttcatggat |
36533092 |
T |
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| Q |
151 |
gcgtaaagtaattagtttagtgtaatttttaaaacaactaactttattttaatgtcaattattgttagttcaagtaagaatgttacttgacttttatact |
250 |
Q |
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| T |
36533093 |
gcgtaaagtaattagtttagtgtaatttttaaaacaactaactttattttaatgtcaattattgttagttcaagtaagaatgttacttgacttttatact |
36533192 |
T |
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| Q |
251 |
ttatccaattctagtaatataacaaccactatatcatacatgcattgacatatatattatatagttgaggacaatgtcattgtgaaacttgtgaaacttt |
350 |
Q |
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| T |
36533193 |
ttatccaattctagtaatataacaaccactatatcatacatgcattgacatatatattatatagttgaggacaatgtcattgtgaaacttgtgaaacttt |
36533292 |
T |
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| Q |
351 |
tttgctcttttggaattggttaagctttgatgggtttcactgttgggttggtaagaaatgtcttctcaagaaatcatgttggttctcatgaaagaaaagt |
450 |
Q |
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| T |
36533293 |
tttgctcttttggaattggttaagctttgatgggtttcactgttgggttggtaagaaatgtcttctcaagaaatcatgttggttctcatgaaagaaaagt |
36533392 |
T |
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| Q |
451 |
aagtcctcaatttctattgcttctccctttgcttctcctct |
491 |
Q |
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| T |
36533393 |
aagtcctcaatttctattgcttctctctttgtttcttctct |
36533433 |
T |
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