View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13110_high_1 (Length: 630)

Name: NF13110_high_1
Description: NF13110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13110_high_1
NF13110_high_1
[»] chr5 (14 HSPs)
chr5 (252-614)||(235900-236254)
chr5 (253-614)||(236317-236670)
chr5 (84-175)||(4085333-4085425)
chr5 (239-306)||(235609-235676)
chr5 (239-306)||(236896-236963)
chr5 (35-87)||(35169140-35169192)
chr5 (36-87)||(7782671-7782722)
chr5 (36-87)||(7783168-7783219)
chr5 (36-87)||(29240871-29240922)
chr5 (36-87)||(26591947-26591998)
chr5 (36-87)||(33052690-33052741)
chr5 (243-313)||(13306229-13306299)
chr5 (239-292)||(17071241-17071294)
chr5 (239-292)||(34600278-34600331)
[»] chr6 (6 HSPs)
chr6 (414-614)||(12345201-12345400)
chr6 (84-240)||(12345576-12345733)
chr6 (265-417)||(12345423-12345575)
chr6 (36-87)||(8888287-8888338)
chr6 (239-292)||(10171293-10171346)
chr6 (239-292)||(26529494-26529547)
[»] chr3 (10 HSPs)
chr3 (414-614)||(17606015-17606215)
chr3 (239-410)||(17606245-17606416)
chr3 (239-306)||(17605724-17605791)
chr3 (239-306)||(981685-981752)
chr3 (239-301)||(37520534-37520596)
chr3 (23-87)||(25704009-25704073)
chr3 (233-281)||(48506449-48506497)
chr3 (36-87)||(36632467-36632518)
chr3 (36-87)||(45878591-45878642)
chr3 (35-87)||(40319728-40319780)
[»] chr4 (20 HSPs)
chr4 (440-614)||(53733308-53733475)
chr4 (247-354)||(53733145-53733252)
chr4 (239-303)||(53733702-53733766)
chr4 (36-87)||(707618-707669)
chr4 (239-295)||(53732453-53732509)
chr4 (36-87)||(707373-707424)
chr4 (36-87)||(729191-729242)
chr4 (36-87)||(3735590-3735641)
chr4 (36-87)||(23095101-23095152)
chr4 (36-87)||(43318753-43318804)
chr4 (36-87)||(47526203-47526254)
chr4 (239-292)||(7842511-7842564)
chr4 (36-87)||(728947-728999)
chr4 (240-292)||(1866362-1866414)
chr4 (242-306)||(1867758-1867822)
chr4 (16-68)||(3334175-3334227)
chr4 (239-295)||(5046002-5046058)
chr4 (36-87)||(6202256-6202308)
chr4 (239-295)||(16903622-16903678)
chr4 (239-307)||(47785767-47785834)
[»] chr7 (16 HSPs)
chr7 (245-607)||(5930525-5930877)
chr7 (238-354)||(21496902-21497019)
chr7 (250-338)||(13784965-13785054)
chr7 (239-306)||(25342514-25342581)
chr7 (239-306)||(25343320-25343387)
chr7 (36-87)||(34951676-34951727)
chr7 (23-87)||(39012645-39012709)
chr7 (35-87)||(39778533-39778585)
chr7 (36-87)||(576696-576747)
chr7 (36-87)||(6496299-6496350)
chr7 (252-299)||(23902699-23902745)
chr7 (36-87)||(32984620-32984671)
chr7 (36-87)||(47396195-47396246)
chr7 (36-84)||(17076577-17076625)
chr7 (36-84)||(19924968-19925016)
chr7 (239-307)||(46428204-46428271)
[»] chr1 (14 HSPs)
chr1 (524-614)||(48561443-48561533)
chr1 (36-87)||(23730034-23730085)
chr1 (36-87)||(52348127-52348178)
chr1 (239-309)||(46812153-46812222)
chr1 (265-306)||(48561939-48561980)
chr1 (36-87)||(5943328-5943379)
chr1 (36-87)||(5943504-5943555)
chr1 (36-87)||(21443428-21443479)
chr1 (37-88)||(52348359-52348410)
chr1 (37-87)||(37691905-37691955)
chr1 (239-280)||(32038494-32038535)
chr1 (42-87)||(34609938-34609983)
chr1 (39-87)||(13522831-13522879)
chr1 (241-281)||(28181552-28181592)
[»] chr8 (11 HSPs)
chr8 (98-173)||(3417824-3417901)
chr8 (37-87)||(24982823-24982873)
chr8 (239-306)||(38576269-38576336)
chr8 (23-87)||(4018282-4018346)
chr8 (36-87)||(5423796-5423847)
chr8 (241-280)||(11686957-11686996)
chr8 (36-87)||(24982642-24982693)
chr8 (36-87)||(24983072-24983123)
chr8 (36-87)||(39028277-39028328)
chr8 (241-295)||(39205495-39205549)
chr8 (239-280)||(31602034-31602075)
[»] chr2 (8 HSPs)
chr2 (450-607)||(15086703-15086849)
chr2 (239-306)||(1297090-1297157)
chr2 (239-306)||(9275604-9275671)
chr2 (36-87)||(23865864-23865915)
chr2 (37-87)||(4232618-4232668)
chr2 (239-300)||(1296397-1296458)
chr2 (239-300)||(9276303-9276364)
chr2 (239-292)||(18174651-18174704)
[»] scaffold0006 (1 HSPs)
scaffold0006 (39-87)||(120842-120890)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 252 - 614
Target Start/End: Complemental strand, 236254 - 235900
Alignment:
Q  252 attcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatattatttcacatctctatttggtgagtatcttttacatcaatcacata 351  Q
    |||||||||||  |||| |||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  236254 attcgttgacaccaaatctcaaccgtctattttattttatcaaa-ggctcatattatttcacatctctatttggtgagtatcttttacatcaatcacata 236156  T
Q  352 ctannnnnnnn-ccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatt--tcctccaattccaccaaagtactttgctgta 448  Q
    |||         ||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||  |  |||||||          | |||| ||||    
T  236155 ctatttttttttccttcaattctttatgttacaatcatacggttccaaagataatttattgccaattaatgttccaatt----------aatttggtgta 236066  T
Q  449 atttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagaggaagg 548  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  236065 atttcctccgctgccacacatcctcttaatttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagaagaagg 235966  T
Q  549 tattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagt 614  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  235965 tattgaatccaagaatgacaattgagtttttgaaattttattccaatttcataactatccctaagt 235900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 253 - 614
Target Start/End: Original strand, 236317 - 236670
Alignment:
Q  253 ttcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatattatttcacatctctatttggtgagtatcttttacatcaatcacatac 352  Q
    ||||||||||  |||| |||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  236317 ttcgttgacaccaaatctcaaccgtctattttattttatcaaa-ggctcatattatttcacatctctatttggtgagtatcttttacatcaatcacatac 236415  T
Q  353 tannnnnnnn-ccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatt--tcctccaattccaccaaagtactttgctgtaa 449  Q
    |          ||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||  |  |||||||          | |||| |||||    
T  236416 tttttttttttccttcaattctttatgttacaatcatacggttccaaagataatttattgccaattaatgttccaatt----------aatttggtgtaa 236505  T
Q  450 tttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagaggaaggt 549  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  236506 tttcctccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagtggaaggt 236605  T
Q  550 attgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagt 614  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  236606 attgaatccaagaatgacaattgagtttttgaaattttattccaatttcataactatccctaagt 236670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 4085333 - 4085425
Alignment:
Q  84 aaaaccatccctcttttttgtgaatagaatgaaaaccatttaaagttaattgaattgatagtctattctatgtgaacaac-aatccagaattg 175  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  4085333 aaaaccacccctcttttttgtgaatagaatgaaaaccctttaaaattaattgaattggtagtttattctatgtgaacaacaaatccagaattg 4085425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 235609 - 235676
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  235609 caggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcatttaatcaaaaggctcatatt 235676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 236963 - 236896
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||| ||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  236963 caggtgtcaacggattcgtagacaccaaatctcaaccgtctatttcatttaatcaaaaggctcatatt 236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 35169192 - 35169140
Alignment:
Q  35 taaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||||||||||||||| ||| | ||||| ||||||||||||    
T  35169192 taaaaataataaaaatactgtgaataaacgtgaaagtgactcgtgacataaaa 35169140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 7782722 - 7782671
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||||||||| |||||||||| |||||||    
T  7782722 aaaaataataaaaatattgcgaataaatgtggaagtgacacgtggcataaaa 7782671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 7783219 - 7783168
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||||||||| |||||||||| |||||||    
T  7783219 aaaaataataaaaatattgcgaataaatgtggaagtgacacgtgtcataaaa 7783168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 29240922 - 29240871
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  29240922 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 29240871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 26591998 - 26591947
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  26591998 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 26591947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 33052741 - 33052690
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| |||||||||| ||| | |||||| |||||||||||    
T  33052741 aaaaataataaaaatattgtgaataaacgtgaaagtgacatgtgacataaaa 33052690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 13306299 - 13306229
Alignment:
Q  243 tgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatattatttcac 313  Q
    ||||||||||||||||||||| ||||  ||||| | ||||||| |||||| ||||| ||  ||||||||||    
T  13306299 tgtcaacgaattcgttgacatcaaatcacaaccatttatctcacttaatccaaaggatctcattatttcac 13306229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 17071241 - 17071294
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    ||||||||||||||||||||||||  |||| |||||||| ||| | ||||||||    
T  17071241 caggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatc 17071294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 34600278 - 34600331
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    ||||||||||||||||||||||||  |||| |||||||| ||| | ||||||||    
T  34600278 caggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatc 34600331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 414 - 614
Target Start/End: Complemental strand, 12345400 - 12345201
Alignment:
Q  414 aatttcctccaattccaccaaagtactttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattcc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  12345400 aatttcctccaattccaccaaagtactttgctgtaatttcttccgctgccacacatccttttagtttataactcatacaatttcaggaataatttattcc 12345301  T
Q  514 aaattgatgaaaacaattgtaaatggagaggaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaag 613  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  12345300 aaattgatgaaaacaattgtaaat-gagaggaaggtattgaatccaagattgacaattgcgtttttgaaattttatttcaatttcataactatccttaag 12345202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 12345733 - 12345576
Alignment:
Q  84 aaaaccatccctcttttttgtgaatagaatgaaaaccatttaaagttaattgaattgatagtctattctatgtgaacaac-aatccagaattgttgtgat 182  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  12345733 aaaaccacccctcttttttgtgaatagaatgaaaaccctttaaagttaattgaattgatagtttattctatgtgaacaacaaatccagaattgttgtgat 12345634  T
Q  183 ctgtaattgagattagaattgattaacaaactttgtacacatgcttccccttgacaca 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  12345633 ctgtaattgagattggaattgattaacaaactttgtacacatgcttccgcttgacaca 12345576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 12345575 - 12345423
Alignment:
Q  265 aaatgtcaaccgtctatctcatttaatcaaaaggctcatattatttcacatctctatttggtgagtatcttttacatcaatcacatacta--nnnnnnnn 362  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||              
T  12345575 aaatctcaaccgtctatctcatttaatcaaaaggctcatattatttcacatctctatttgatgagtatcttttacatcaattacatactatttttttttt 12345476  T
Q  363 ccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatt 417  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12345475 ccttcaattatt--tgttacaatcatatggttccagagacaatttattgccaatt 12345423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 8888287 - 8888338
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  8888287 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 8888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 10171293 - 10171346
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    |||||||||||| |||||||||||  |||| |||||||||||| ||| ||||||    
T  10171293 caggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcaattaatc 10171346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 26529547 - 26529494
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    |||||||||||| |||||||||||  |||| |||||||||||| ||| ||||||    
T  26529547 caggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcaattaatc 26529494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 414 - 614
Target Start/End: Complemental strand, 17606215 - 17606015
Alignment:
Q  414 aatttcctccaattccaccaaagtactttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattcc 513  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17606215 aatttcctccaattccaccaaaataatttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggatgatttattcc 17606116  T
Q  514 aaattgatgaaaacaattgtaaatggagaggaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaag 613  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  17606115 aaattgatgaaaacaattgtaaatggagtggaaggtattgaatccaagattgacaattgagtttttgaaattttataccaatttcataacaatccataag 17606016  T
Q  614 t 614  Q
    |    
T  17606015 t 17606015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 239 - 410
Target Start/End: Complemental strand, 17606416 - 17606245
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatattatttcacatctctatttggtgagtatctttta 338  Q
    |||||||||||  ||||||| ||||||||| |||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17606416 caggtgtcaacagattcgttaacattaaatctcaaccgtctattttattttatcaaa-ggctcatattatttcacatctctatttggtgagtatctttta 17606318  T
Q  339 catcaatcacatacta-nnnnnnnnccttcaattatttatgttacaatcatatggttccagagacaatttatt 410  Q
    ||||||||||||||||         | ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17606317 catcaatcacatactatttttttttcattcaattatttatgttacaatcataaggttctagagacaatttatt 17606245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 17605724 - 17605791
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||||||||| ||||||||||||||| ||||||||    
T  17605724 caggtgtcaacggattcgttgacaccaaatttcaaccgtctatttcatttaatcaaaagactcatatt 17605791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 981685 - 981752
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    ||||||||||||||||||||||||  |||| ||||||||  || ||||||||||||||||||| ||||    
T  981685 caggtgtcaacgaattcgttgacaccaaatctcaaccgtacatttcatttaatcaaaaggctcgtatt 981752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 37520596 - 37520534
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctc 301  Q
    ||||||||||||||||||||||||  |||| |||||| || |||| |||||||| ||||||||    
T  37520596 caggtgtcaacgaattcgttgacaccaaatctcaaccatcaatcttatttaatctaaaggctc 37520534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 25704009 - 25704073
Alignment:
Q  23 ttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||  || ||||||||||||| || || |||| |||||||| ||||||||||||||||||    
T  25704009 ttttaaaaatagaaaaaataataaaagtattgagaatgaatgtggaagtgacacgtgacataaaa 25704073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 48506449 - 48506497
Alignment:
Q  233 ttgacacaggtgtcaacgaattcgttgacattaaatgtcaaccgtctat 281  Q
    ||||||| ||||||||||||||||||||||  |||| ||||||||||||    
T  48506449 ttgacactggtgtcaacgaattcgttgacaccaaatctcaaccgtctat 48506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 36632518 - 36632467
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||| ||||    
T  36632518 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacacaaaa 36632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 45878591 - 45878642
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  45878591 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 45878642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 40319780 - 40319728
Alignment:
Q  35 taaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||||||| || ||||| ||||||| |||||| ||| |||||||    
T  40319780 taaaaataataaaaatattgcgaatatatgtggaagtgacatgtggcataaaa 40319728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 8e-69; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 440 - 614
Target Start/End: Original strand, 53733308 - 53733475
Alignment:
Q  440 tttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatgg 539  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||    
T  53733308 tttggtgtaatttcttccgctgccacacatcctcttagtttatagctcatacag-------gataatttattccaaattgatgaaaacaattgtaaatgg 53733400  T
Q  540 agaggaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagt 614  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53733401 agaagaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccctaagt 53733475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 53733145 - 53733252
Alignment:
Q  247 aacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatattatttcacatctctatttggtgagtatcttttacatcaatc 346  Q
    |||||||||||||| |  |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53733145 aacgaattcgttgataccaaatctcaaccgtctatctcatttaatcaaaagactcatattatttcacatctctatctggtgagtatcttttacatcaatc 53733244  T
Q  347 acatacta 354  Q
    ||||||||    
T  53733245 acatacta 53733252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 53733766 - 53733702
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcat 303  Q
    |||||||||||| |||||||||||  |||| |||||| ||||| |||||||||||||||||||||    
T  53733766 caggtgtcaacggattcgttgacaccaaatttcaaccatctatttcatttaatcaaaaggctcat 53733702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 707669 - 707618
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  707669 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 707618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 53732453 - 53732509
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaa 295  Q
    |||||||||||| ||||||||||| ||||| |||||||||||| | |||| ||||||    
T  53732453 caggtgtcaacggattcgttgacactaaatctcaaccgtctattttattttatcaaa 53732509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 707424 - 707373
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| || |||||||||||||||    
T  707424 aaaaataataaaaatattgcgaataaacgtggaagttacacgtgacataaaa 707373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 729191 - 729242
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| || |||||||||||||||    
T  729191 aaaaataataaaaatattgcgaataaacgtggaagttacacgtgacataaaa 729242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 3735641 - 3735590
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  3735641 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 3735590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 23095152 - 23095101
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || |||| ||| |||| ||||||||||||||||||    
T  23095152 aaaaataataaaaatattgagaatgaatatggaagtgacacgtgacataaaa 23095101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 43318753 - 43318804
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || |||||||| || | ||||||||||||||||||    
T  43318753 aaaaataataaaaatattgcgaataaatatgaaagtgacacgtgacataaaa 43318804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 47526254 - 47526203
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  47526254 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 47526203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 7842564 - 7842511
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    ||||||||||||||||||||||||  |||| |||||| ||||| ||||| ||||    
T  7842564 caggtgtcaacgaattcgttgacaccaaatctcaaccatctatttcattaaatc 7842511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 728947 - 728999
Alignment:
Q  36 aaaaataataaaaatact-gtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| | | ||||||| ||||| ||||||||||||||||||    
T  728947 aaaaataataaaaatattcgcgaataaacgtggaagtgacacgtgacataaaa 728999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 1866362 - 1866414
Alignment:
Q  240 aggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    ||||||||| |||||||||||||  |||| |||||| || |||||||||||||    
T  1866362 aggtgtcaatgaattcgttgacaccaaatctcaaccatcaatctcatttaatc 1866414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 1867822 - 1867758
Alignment:
Q  242 gtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    ||||||||||||| ||||| | ||||| |||||| || ||||||||||||| || | ||||||||    
T  1867822 gtgtcaacgaatttgttgatactaaatctcaaccatcaatctcatttaatccaacgactcatatt 1867758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 3334227 - 3334175
Alignment:
Q  16 atattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtgga 68  Q
    ||||| |||||||||  || |||||||||||||||| || |||||||||||||    
T  3334227 atattggttttaaaaatagaaaaaataataaaaatattgagaataaatgtgga 3334175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 5046002 - 5046058
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaa 295  Q
    |||||||||||| |||||||||||  |||| |||||||| ||| | |||||||||||    
T  5046002 caggtgtcaacggattcgttgacaccaaatctcaaccgtttattttatttaatcaaa 5046058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 6202256 - 6202308
Alignment:
Q  36 aaaaataataaaaa-tactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||| || || ||||||| ||||| ||||||||||||||||||    
T  6202256 aaaaataataaaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 6202308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 16903678 - 16903622
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaa 295  Q
    |||||||||||| |||||||||||  |||| ||||||||| ||||  ||||||||||    
T  16903678 caggtgtcaacggattcgttgacaccaaatctcaaccgtcaatctattttaatcaaa 16903622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 47785834 - 47785767
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatta 307  Q
    |||||||||||| |||||||||||  |||| |||||| ||||| | |||||||| |||||| |||||||    
T  47785834 caggtgtcaacggattcgttgacaccaaatctcaaccatctatat-atttaatccaaaggcacatatta 47785767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 245 - 607
Target Start/End: Original strand, 5930525 - 5930877
Alignment:
Q  245 tcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt-atttcacatctctatttggtgagtatcttttacatca 343  Q
    ||||||||||||||||||  |||| | |||| |||||||||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||| | |||    
T  5930525 tcaacgaattcgttgacaccaaatcttaaccatctatctcatttaatcaaaatgctcatatttaattcacgtctctgtttggtgagtatcttttgcctca 5930624  T
Q  344 atcacatactannnnnnnnccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatttcctccaattccaccaaagtactttg 443  Q
    |||||||||||          ||||||||| ||||||||||||||| ||||  || || |||||||| |||| ||  |    |||||    | || ||||    
T  5930625 atcacatactattttt-----ttcaattatatatgttacaatcatacggttttagggataatttatt-ccaaattaatg---ttcca----attaatttg 5930711  T
Q  444 ctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataattt--attccaaattgatgaaaacaattgtaaatggag 541  Q
     |||||||||||||||| || |||| ||| || |||||| ||||||||||||| ||||| || ||  |||||||||| |||||||||||||||||  |||    
T  5930712 gtgtaatttcttccgctaccgcacacccttttggtttattactcatacagttttagggacaacttctattccaaattaatgaaaacaattgtaaacagag 5930811  T
Q  542 aggaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatc 607  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  5930812 aggatggtattaaatccaagattgacaattgagtttctgaaattttatttcaatttcataattatc 5930877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 21497019 - 21496902
Alignment:
Q  238 acaggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcata-ttatttcacatctctatttggtgagtatcttt 336  Q
    |||||||||||||||||||||||||  |||| |||||||| |||||||||||||||||||| ||||| ||| ||||| ||||||||| ||||||||||||    
T  21497019 acaggtgtcaacgaattcgttgacaccaaatctcaaccgtttatctcatttaatcaaaaggttcatatttaattcacgtctctatttagtgagtatcttt 21496920  T
Q  337 tacatcaatcacatacta 354  Q
    | | | ||||||||||||    
T  21496919 ttccttaatcacatacta 21496902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 13784965 - 13785054
Alignment:
Q  250 gaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcata-ttatttcacatctctatttggtgagtatctttta 338  Q
    |||||||||||||  |||| |||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||  |||||||||||||    
T  13784965 gaattcgttgacaccaaatctcaaccgtttatctcatttaatcaaaaggttcatatttaattcacatctctatttaatgagtatctttta 13785054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 25342514 - 25342581
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||| || || | ||||||||||||||||||||||    
T  25342514 caggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 25342581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 25343320 - 25343387
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||| || || | ||||||||||||||||||||||    
T  25343320 caggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 25343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 34951676 - 34951727
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  34951676 aaaaataataaaaatattgagaataaacgtggaagtgacacgtgacataaaa 34951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 39012645 - 39012709
Alignment:
Q  23 ttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||  || |||||||||||||||| || |||| ||||| || ||||||||||||||||||    
T  39012645 ttttaaaaatagaaaaaataataaaaatattgagaatgaatgttgaagtgacacgtgacataaaa 39012709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 39778585 - 39778533
Alignment:
Q  35 taaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||||||| || ||||||| ||||| |||||| |||||||||||    
T  39778585 taaaaataataaaaatattgcgaataaacgtggaagtgacaagtgacataaaa 39778533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 576696 - 576747
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  576696 aaaaataataaaaataatgggaataaacgtgaaagtgacacgtgacataaaa 576747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 6496350 - 6496299
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  6496350 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 6496299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 23902745 - 23902699
Alignment:
Q  252 attcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggc 299  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  23902745 attcgttgacactaaatctcaaccgtctatct-atttaatcaaaaggc 23902699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 32984671 - 32984620
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| |  ||||||| ||||| ||||||||||||||||||    
T  32984671 aaaaataataaaaatattacgaataaacgtggaagtgacacgtgacataaaa 32984620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 47396246 - 47396195
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  47396246 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 47396195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 17076577 - 17076625
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacata 84  Q
    |||||||||||||||  || |||| |||||||| |||||||||||||||    
T  17076577 aaaaataataaaaatgttgagaatgaatgtggaagtgacacgtgacata 17076625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 19925016 - 19924968
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacata 84  Q
    |||||||||||||||| || ||||||| ||||| ||||||| |||||||    
T  19925016 aaaaataataaaaatattgagaataaacgtggaagtgacacatgacata 19924968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 46428204 - 46428271
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatta 307  Q
    |||||||||||| |||||||||||  |||| |||||| ||||| | |||||||| |||||| |||||||    
T  46428204 caggtgtcaacggattcgttgacaccaaatctcaaccatctatat-atttaatccaaaggcacatatta 46428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 524 - 614
Target Start/End: Original strand, 48561443 - 48561533
Alignment:
Q  524 aaacaattgtaaatggagaggaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagt 614  Q
    ||||||| | |||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||    
T  48561443 aaacaatgggaaatggagaggaagctattgaatccaagattgacaaatgagattctgaaattttattccaatttcataattatccttaagt 48561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 23730085 - 23730034
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| |||||||||| ||| | ||||||||||||||||||    
T  23730085 aaaaataataaaaatattgtgaataaacgtgaaagtgacacgtgacataaaa 23730034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 52348178 - 52348127
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  52348178 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 52348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 46812222 - 46812153
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatattatt 309  Q
    |||||||||||| |||||||||||  |||| |||||||||||||| |||||||| |||||| || ||||||    
T  46812222 caggtgtcaacggattcgttgacaccaaatctcaaccgtctatct-atttaatctaaaggcacagattatt 46812153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 48561980 - 48561939
Alignment:
Q  265 aaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  48561980 aaatctcaaccgtctatttcatttaatcaaaaggctcatatt 48561939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 5943328 - 5943379
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| |||||||| | ||||| |||||||||| |||||||    
T  5943328 aaaaataataaaaatattgtgaatatacgtggaagtgacacgtggcataaaa 5943379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 5943504 - 5943555
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  5943504 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 5943555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 21443428 - 21443479
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  21443428 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 21443479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 52348410 - 52348359
Alignment:
Q  37 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaac 88  Q
    ||||||||||||||| |  ||||||| ||||| |||||||||||||||||||    
T  52348410 aaaataataaaaatattacgaataaacgtggaagtgacacgtgacataaaac 52348359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 37691905 - 37691955
Alignment:
Q  37 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  37691905 aaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 37691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 32038494 - 32038535
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtcta 280  Q
    ||||||||||||||||||||||||  |||| |||||||||||    
T  32038494 caggtgtcaacgaattcgttgacaccaaatctcaaccgtcta 32038535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 34609938 - 34609983
Alignment:
Q  42 aataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||| || ||||||| ||||| ||||||||||||||||||    
T  34609938 aataaaaatattgagaataaacgtggaagtgacacgtgacataaaa 34609983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 13522831 - 13522879
Alignment:
Q  39 aataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||| || ||||||||||||| |||| ||||| |||||||    
T  13522831 aataataaaaatattgcgaataaatgtggaagtgatacgtggcataaaa 13522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 28181552 - 28181592
Alignment:
Q  241 ggtgtcaacgaattcgttgacattaaatgtcaaccgtctat 281  Q
    ||||||||||||||||||||||  |||| ||||||||||||    
T  28181552 ggtgtcaacgaattcgttgacaccaaatctcaaccgtctat 28181592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 3417824 - 3417901
Alignment:
Q  98 tttttgtgaatagaatgaaaaccatttaaa-gttaattgaattgatagtctattctatgtgaacaac-aatccagaat 173  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  3417824 tttttgtgaatagaatgaaaaccctttaaaagttaattgaattggtagtttattctatgtgaacaacaaatccagaat 3417901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 24982873 - 24982823
Alignment:
Q  37 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  24982873 aaaataataaaaatattgtgaataaacgtggaagtgacacgtgacataaaa 24982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 38576336 - 38576269
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||| || || | ||||||||||||||||||||||    
T  38576336 caggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 38576269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 4018282 - 4018346
Alignment:
Q  23 ttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||  || |||||||||||||||| || |||| |||||||| |||||||||| |||||||    
T  4018282 ttttaaaaatagaaaaaataataaaaatattgagaatgaatgtggaagtgacacgtggcataaaa 4018346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 5423847 - 5423796
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||| |||| || ||||||| ||||| ||||||||||||||||||    
T  5423847 aaaaataataataatattgagaataaacgtggaagtgacacgtgacataaaa 5423796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 11686996 - 11686957
Alignment:
Q  241 ggtgtcaacgaattcgttgacattaaatgtcaaccgtcta 280  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  11686996 ggtgtcaacgaattcgttgacactaaatctcaaccgtcta 11686957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 24982693 - 24982642
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||| | ||||| ||||||||||||||||||    
T  24982693 aaaaataataaaaatattgcgaatatacgtggaagtgacacgtgacataaaa 24982642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 24983123 - 24983072
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||| | ||||| ||||||||||||||||||    
T  24983123 aaaaataataaaaatattgcgaatatacgtggaagtgacacgtgacataaaa 24983072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39028328 - 39028277
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||||||| | |||||||||| |||||||    
T  39028328 aaaaataataaaaataatgcgaataaatgtgaaagtgacacgtggcataaaa 39028277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 39205495 - 39205549
Alignment:
Q  241 ggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaa 295  Q
    ||||||||||||| ||||||||| |||| |||||| ||||| | |||||||||||    
T  39205495 ggtgtcaacgaatccgttgacatcaaatctcaaccatctattttatttaatcaaa 39205549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 31602034 - 31602075
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtcta 280  Q
    ||||||||||||||||||||||||  |||| |||||||||||    
T  31602034 caggtgtcaacgaattcgttgacaccaaatctcaaccgtcta 31602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 607
Target Start/End: Complemental strand, 15086849 - 15086703
Alignment:
Q  450 tttcttccgctgccacacatcctcttagtttataactcatacag-tttcagggataatttattccaaattgatgaaaacaattgtaaatggagaggaagg 548  Q
    ||||||||||| ||||||| | | || ||| || |||||||| | ||||||||| ||||||||||||||| ||||||||||| | |||| |             
T  15086849 tttcttccgctaccacacaccgtattggttcattactcatacgggtttcagggacaatttattccaaattaatgaaaacaatggcaaatag--------- 15086759  T
Q  549 tattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatc 607  Q
       |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  15086758 ---tgaatccaagattggcaattgagtttctgtaattttattccaatttcataattatc 15086703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 1297157 - 1297090
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||| || || | ||||||||||||||||||||||    
T  1297157 caggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 1297090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 9275604 - 9275671
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggctcatatt 306  Q
    |||||||||||| |||||||||||  |||| |||||| || || | ||||||||||||||||||||||    
T  9275604 caggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 9275671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 23865864 - 23865915
Alignment:
Q  36 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    |||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  23865864 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 23865915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 4232668 - 4232618
Alignment:
Q  37 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  4232668 aaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 4232618  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 1296397 - 1296458
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggct 300  Q
    ||||||||||||||||||||||||  |||| |||||| || || |  |||||||||||||||    
T  1296397 caggtgtcaacgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaaggct 1296458  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 9276364 - 9276303
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatcaaaaggct 300  Q
    ||||||||||||||||||||||||  |||| |||||| || || |  |||||||||||||||    
T  9276364 caggtgtcaacgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaaggct 9276303  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 18174704 - 18174651
Alignment:
Q  239 caggtgtcaacgaattcgttgacattaaatgtcaaccgtctatctcatttaatc 292  Q
    ||||||||||||||||||||||||  |||| |||||||| ||| | ||||||||    
T  18174704 caggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatc 18174651  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 120842 - 120890
Alignment:
Q  39 aataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 87  Q
    ||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  120842 aataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 120890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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