View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13110_high_5 (Length: 251)

Name: NF13110_high_5
Description: NF13110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13110_high_5
NF13110_high_5
[»] chr2 (3 HSPs)
chr2 (19-251)||(4773455-4773686)
chr2 (168-250)||(2465728-2465810)
chr2 (19-152)||(36353816-36353946)
[»] chr1 (2 HSPs)
chr1 (19-250)||(26487434-26487661)
chr1 (18-250)||(44403783-44404011)
[»] chr5 (1 HSPs)
chr5 (172-247)||(2147918-2147993)
[»] chr3 (4 HSPs)
chr3 (168-250)||(2904245-2904327)
chr3 (168-250)||(50654621-50654703)
chr3 (109-151)||(50654727-50654769)
chr3 (22-118)||(2904339-2904431)
[»] chr4 (1 HSPs)
chr4 (21-71)||(3241193-3241241)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 4773455 - 4773686
Alignment:
Q  19 gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4773455 gggttatgatggtctaatttgtaagagcacgatggcagttttcaatttggtttttttcgaaagtgtgaggatctctaatatccatcctactgagattcaa 4773554  T
Q  119 gctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4773555 gctctctagattggaatcaagttgtgttgggaggtcggctat-aaaaaacttatgtgttactctaactctcttcatgtggggcaattggtgtcgaagaac 4773653  T
Q  219 acttctcgtttccatcactatgcaaatatctta 251  Q
    |||||||||||||||||| ||||||||||||||    
T  4773654 acttctcgtttccatcaccatgcaaatatctta 4773686  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 2465810 - 2465728
Alignment:
Q  168 cttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatatctt 250  Q
    ||||||||||||||| |||  |||||||||| | |||||||||||||| | | ||| | ||||||||||||||||||||||||    
T  2465810 cttatgtgttactctgactatcttcatgtggtgtaattggtgtcgaaggagatttcacatttccatcactatgcaaatatctt 2465728  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 36353946 - 36353816
Alignment:
Q  19 gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa 118  Q
    |||||||| |||||||||| |||||  ||| |||  ||||||||||||| ||| | | | | | ||| ||||||||||||||| || | |||||||| |     
T  36353946 gggttatggtggtctaattcgtaag--cactatgacagttttcaatttgatttctttggta-gagtggggatctctaatatccttcatgctgagatttag 36353850  T
Q  119 gctctctagattggaatcaagttgtgttgggagg 152  Q
    ||||| ||| ||||||||||||||||||||||||    
T  36353849 gctctttagtttggaatcaagttgtgttgggagg 36353816  T

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Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 26487434 - 26487661
Alignment:
Q  19 gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa 118  Q
    |||||||| |||||||||| |||||  ||||| || | ||| ||| ||||||||| ||||||||||| |||||| |||||||| || | |||||||||||    
T  26487434 gggttatggtggtctaattagtaag--cacgacggcaatttccaacttggttttt-tcgaaagtgtggggatctttaatatccttcatgctgagattcaa 26487530  T
Q  119 gctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaac 218  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||       ||||||||||||||| |||| |||||||||| |||||||||||||| | ||    
T  26487531 gctctctggattggaattaagttgtgttgggaggcaggctat-aaaaaacttatgtgttactctgactctcttcatgtggtgcaattggtgtcgacggac 26487629  T
Q  219 acttctcgtttccatcactatgcaaatatctt 250  Q
    ||  | ||||||||||| ||||||||||||||    
T  26487630 acaccacgtttccatcattatgcaaatatctt 26487661  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 44404011 - 44403783
Alignment:
Q  18 cgggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctact-gagattc 116  Q
    ||||| ||| |||||||||| |||||  |||||||| |  |||||| ||||||||| |||||| | || ||||||||||||||| || | |  |||||||    
T  44404011 cgggtgatggtggtctaattagtaag--cacgatggcaactttcaacttggttttt-tcgaaa-tatggggatctctaatatccttcatgccagagattc 44403916  T
Q  117 aagctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaattggtgtcgaaga 216  Q
     |||||||| |||||||||||| |||||||||||||  | ||||       |||||||| |||| | |||| |||||||||| | |||||||||| |||     
T  44403915 tagctctctggattggaatcaaattgtgttgggaggcagactat-aaaaaacttatgtgctactatgactctcttcatgtggtgtaattggtgtcaaagg 44403817  T
Q  217 acacttctcgtttccatcactatgcaaatatctt 250  Q
    | ||| |  ||||||||||| |||||||||||||    
T  44403816 atactccaggtttccatcaccatgcaaatatctt 44403783  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 2147993 - 2147918
Alignment:
Q  172 tgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatat 247  Q
    ||||||||||| |||| |||||||||  |||||||||||||||| ||||| | |||||||||||||||||||||||    
T  2147993 tgtgttactctgactctcttcatgtgatgcaattggtgtcgaaggacactccacgtttccatcactatgcaaatat 2147918  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 2904327 - 2904245
Alignment:
Q  168 cttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatatctt 250  Q
    ||||| ||||||| | |||| |||||| |||  || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  2904327 cttatatgttactttgactctcttcatatggtacatttggtgtcgaagaacacttcacgtttccatcactatgcaaatatctt 2904245  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 50654703 - 50654621
Alignment:
Q  168 cttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatatctt 250  Q
    ||||| ||||||||| |||| |||||||||  ||||||| |||||||  || || | ||||||||||||||||||||||||||    
T  50654703 cttatttgttactctgactctcttcatgtgatgcaattgatgtcgaatgactctccacgtttccatcactatgcaaatatctt 50654621  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 50654769 - 50654727
Alignment:
Q  109 tgagattcaagctctctagattggaatcaagttgtgttgggag 151  Q
    |||| |||||||||||| ||||||||||||||| |||||||||    
T  50654769 tgaggttcaagctctctggattggaatcaagttatgttgggag 50654727  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 2904431 - 2904339
Alignment:
Q  22 ttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa 118  Q
    ||||| |||||||||||| |||  ||| |||| ||||||||| ||||||||| |||||| ||||  |||||||||||||| || | |||||||||||    
T  2904431 ttatggtggtctaatttgcaag--cacaatggcagttttcaacttggttttt-tcgaaa-tgtggagatctctaatatccttcttgctgagattcaa 2904339  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 3241241 - 3241193
Alignment:
Q  21 gttatgatggtctaatttgtaagagcacgatggtagttttcaatttggttt 71  Q
    |||||||||||||||||||||  |||||||||| ||||||||| |||||||    
T  3241241 gttatgatggtctaatttgta--agcacgatggaagttttcaacttggttt 3241193  T

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