View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13110_low_2 (Length: 510)
Name: NF13110_low_2
Description: NF13110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13110_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 40955640 - 40955214
Alignment:
| Q |
13 |
aatataccaatacttatttcattnnnnnnntataaattcatactaaacaatcatcatccaagtgatttctccttactactcgtcaaaatatttttaggtg |
112 |
Q |
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| T |
40955640 |
aatataccaatacttatttcattaaaaaaatataaattcatactaaacaatcatcatccaagtgatttctccttacaactcgtcaaaatatttttaggtg |
40955541 |
T |
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| Q |
113 |
tacgtttatactagatattgaaaggttaattggtgctatagggtctaattgtaatcacaacgagcttgtttggttttttcagccttttacttctttggag |
212 |
Q |
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| T |
40955540 |
tacgtttatactagatattgaaaggttaattggtgctatagggtctaattgtaatcacaacgagcttgtttggttttttcagccttttacttctttggag |
40955441 |
T |
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| Q |
213 |
tttgctcttacttcaaacggtattcggctagtttgacattcaacggtgaagttgatcttaaagtgtcaaaatgatgttcatattgttaaatatgatggtg |
312 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
40955440 |
tttgctcttacttcaaacggcattcggctagtttgacattcaacggtgaagttgatctcaaagtgtcaaaatgatgttcatattgttaaatatgacggtg |
40955341 |
T |
|
| Q |
313 |
agcaattagtaaatcatttcatattctcttttcaagagtgattttcaggtaagtcatcgggatctcctagtactttccatcaatgggttggatagggtat |
412 |
Q |
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| T |
40955340 |
agcaattagtaaatcatttcatattctcttttcgagagtgattttcaggtaagtcatcgggatctcctagtactttccatcaatgggttggatagggtat |
40955241 |
T |
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| Q |
413 |
acaaaactcgacctagtcatttagctg |
439 |
Q |
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| T |
40955240 |
acaaaactcgacctagtcatttagctg |
40955214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 432 - 492
Target Start/End: Complemental strand, 40954850 - 40954790
Alignment:
| Q |
432 |
tttagctgagcccgatccattggcttctggtcgggtttgaattgaatccaacccgacaaaa |
492 |
Q |
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| T |
40954850 |
tttagctgagcccgatccattggcttctggtcgggtttgaatcgaatccaacctgacaaaa |
40954790 |
T |
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