View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13111_low_2 (Length: 369)
Name: NF13111_low_2
Description: NF13111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13111_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 10777875 - 10778216
Alignment:
| Q |
19 |
ccacgcacaaacatcttcatctcttgctgcaaattttaggagggatttgaatcatgtggagcaccattgctaatttgaaagagaatttgaacaagatcgc |
118 |
Q |
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| T |
10777875 |
ccacgcacaaacatcttcatctcttgctgcaaattttacgagggatttgaatcatgtggagcaccattgctaatttgaaagagaatttgaacaagatcgc |
10777974 |
T |
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| Q |
119 |
actcgatgttcacgacaaagacgaagaagaagatgaagtgagcgaggaatcttctgtctcggataactggaattctaacggatttgtccgttctaatggt |
218 |
Q |
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| T |
10777975 |
actcgatgttcacgacaaagacgaagaagaagatgaagtgagcaaggaatcttctgtctccgatagctggaattctaacggatttgtccgttctaatggt |
10778074 |
T |
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| Q |
219 |
gttgatcgtgttttgctttctgaggttaatttcactctctcgatgcttatatcttgaaattgtttgtgtttaactaactatacagctatatatagctagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10778075 |
gttgatcgtgttttgctttctgaggttaatttcactctctcgatgcttatatcttgaaattgtttgtgtttaactaactatacagctatatatagctagt |
10778174 |
T |
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| Q |
319 |
cttagaatagcaaatcctacacttacgaaaacatacgctctg |
360 |
Q |
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| T |
10778175 |
cttagaatagcaaatcctacacttacgaaaacatacgctctg |
10778216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 30045553 - 30045491
Alignment:
| Q |
69 |
atcatgtggagcaccattgctaatttgaaagagaatttgaacaagatcgcactcgatgttcac |
131 |
Q |
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| T |
30045553 |
atcatgtggagcaccattgccaatttgaaggagaatttgaatcagatcgctctcgatgttcac |
30045491 |
T |
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