View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13111_low_3 (Length: 364)
Name: NF13111_low_3
Description: NF13111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13111_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 33046028 - 33045766
Alignment:
| Q |
9 |
gaagaaaatgctcaagggagtcatgtcatacaaaaacaacattggtttatgaatttgatgggtggtggtggttggaatgacaaacctcctttgggagatg |
108 |
Q |
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| T |
33046028 |
gaagaaaatgctcaagggagtcatgtcatacaaaagcaacattggtttatgaatttgatgggtggtggcggttggaatgacaaacctcctttgggagatg |
33045929 |
T |
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| Q |
109 |
tttgtcaacaaaatggattttagccaaaaccattttcccattgagaagtgttgtgcttgtttttgttgtcgtttgatgtttggtttatctactaatgttt |
208 |
Q |
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| T |
33045928 |
tttgtcaacaaaatggattttagccaaacccattttcccattgagaagtgttgtgcttgtttttgttgtcgtttgatgtttggtttatctactaatgttt |
33045829 |
T |
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| Q |
209 |
actttgaatatgcattctaaaataagtgaccatggtcatgcatttgtggtattttggattcac |
271 |
Q |
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| T |
33045828 |
tctttgaatatgcattctaaaataagtgaccatggtcatgcatttgtggtattttggattcac |
33045766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 33045710 - 33045668
Alignment:
| Q |
286 |
tgtttaattttgatgtagctgctttttctttgtatttggatct |
328 |
Q |
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| T |
33045710 |
tgtttaattttgatgtagctgctttttctttgtatttggatct |
33045668 |
T |
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