View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13111_low_5 (Length: 263)
Name: NF13111_low_5
Description: NF13111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13111_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 10778449 - 10778256
Alignment:
| Q |
13 |
atctaagctaatgaacagccatcaacattcccagctcaagcaaccatagccgaagtggttcatggataaacttataatatggaccatagaaagtaaatat |
112 |
Q |
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| T |
10778449 |
atctaagctaatcaacagccatcaacattcccagctcaagcaaccatagccgaagtggttcatggataaacttataatctggaccatagaaagtaaacat |
10778350 |
T |
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| Q |
113 |
aggtacaattggccgaactccgagatataccttttataaatacaccctccaccctataatatagaccatatacattatatatcaaactaacgaa |
206 |
Q |
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| T |
10778349 |
aggtacaattggccgaactccgagatataccttttataaatacaccctccagcctataatatagaccatatacattatttatccaaccaacgaa |
10778256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 10778240 - 10778203
Alignment:
| Q |
226 |
gcttataacagtgagtgaccagaccagaccgtatgttt |
263 |
Q |
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| T |
10778240 |
gcttataacagtgagtgaccagaccagagcgtatgttt |
10778203 |
T |
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