View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13112_high_1 (Length: 690)

Name: NF13112_high_1
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13112_high_1
NF13112_high_1
[»] chr4 (4 HSPs)
chr4 (223-671)||(18837857-18838288)
chr4 (108-167)||(3654473-3654532)
chr4 (439-563)||(18829276-18829399)
chr4 (108-164)||(598564-598620)
[»] chr3 (5 HSPs)
chr3 (9-180)||(960425-960597)
chr3 (9-167)||(13477829-13477982)
chr3 (51-167)||(44701321-44701436)
chr3 (108-180)||(959857-959930)
chr3 (108-164)||(33277462-33277518)
[»] chr2 (2 HSPs)
chr2 (9-167)||(13545525-13545679)
chr2 (108-180)||(27178602-27178675)
[»] chr7 (3 HSPs)
chr7 (9-167)||(45921249-45921403)
chr7 (108-167)||(31278112-31278171)
chr7 (108-164)||(45099176-45099232)
[»] chr1 (3 HSPs)
chr1 (108-167)||(17172620-17172679)
chr1 (108-164)||(12761454-12761510)
chr1 (108-164)||(37852561-37852617)
[»] chr8 (1 HSPs)
chr8 (108-164)||(32979781-32979837)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 223 - 671
Target Start/End: Complemental strand, 18838288 - 18837857
Alignment:
Q  223 aaaatgactatcttacatagaca--cacttcaatccctattaaatgtatgtttgttctctttagcctatgtattaactttttagcctcttcatgggtgga 320  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18838288 aaaatgactatcttatatagacaaacacttcaatccctattaaatgtatgtttgttctctttagcctatgtattaactttttagcctctgcatgggtgga 18838189  T
Q  321 aatgtgctaagtagtataataaggctacatggcctagactattttaaaatagacaagaagaaacattttttaaagtctaacatatatctaacatgcatgt 420  Q
    ||||||||||||||| ||||| |||||||||| |||                   |||||||||||||||||||||||||||||||||||||||||||||    
T  18838188 aatgtgctaagtagtctaatagggctacatggtcta-------------------agaagaaacattttttaaagtctaacatatatctaacatgcatgt 18838108  T
Q  421 atgatgtgtgtgtatgtttgaatactaatttagtaggttactacaatgtcttccaacaagaaaaggcttatgagaagagtgttctcaacaaatattggaa 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18838107 atgatgtgtgtgtatgtttgaatactaatttagtaggttactacaatgtctttcaacaagaaaaggcttatgagaagagtgttctcaacaaatattggaa 18838008  T
Q  521 gttgtggctgtgcaaaaaagaaagcaattgaggtacacgagcctattcaaaaggccaaaatttccattagccaaattactaaggcttcatccaacacagc 620  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||| |    
T  18838007 gttgtggctgtgcaaaaaagaaagcaattgaagtccacgagcctattcaaaagaccaaaatttccattagccaaattagcaaggcttcatccaacacaac 18837908  T
Q  621 tttaggtgaacgaaagggtgccggttgtagcgtcgatcacagcgacgattt 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18837907 tttaggtgaacgaaagggtgccggttgtagcgtcgatcacagcgacgattt 18837857  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 3654473 - 3654532
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa 167  Q
    ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||    
T  3654473 taagtgaattaacaagagccattggatcaaatgaaatcaagggacatgatttggtgtcaa 3654532  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 563
Target Start/End: Original strand, 18829276 - 18829399
Alignment:
Q  439 tgaatactaatttagtaggtta--ctacaatgtcttccaacaagaaaaggcttatgagaagagtgttctcaacaaatattggaagttgtggctgtgcaaa 536  Q
    ||||||||||||||  ||||||  ||| ||||||||||||||||||||  ||||| |||| | | ||| || |||||   ||||||||||| ||||||||    
T  18829276 tgaatactaatttacaaggttatactataatgtcttccaacaagaaaaaccttataagaacatttttcacatcaaat---ggaagttgtggatgtgcaaa 18829372  T
Q  537 aaagaaagcaattgaggtacacgagcc 563  Q
    ||  ||||||||| | |||||||||||    
T  18829373 aacaaaagcaattcaagtacacgagcc 18829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 598620 - 598564
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgt 164  Q
    ||||||||||||||| |||| |||| | |||| ||||||| |||| |||||||||||    
T  598620 taagtgaattaacaagagtctttgggttaaattaaatcaacggatgtgatttggtgt 598564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 2e-85; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 960425 - 960597
Alignment:
Q  9 gagatgaacgaaaactggagacagcagatggcgtacgtataacgagagaatgaagactgcggaggtgaggtttagtgcatcatgcgttaggtacaaggat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  960425 gagatgaacgaaaactggagacagcagatggcgtacgtataacgagagaatgaagacggcggaggtgaggtttagtgcatcatgcgttaggtacaaggat 960524  T
Q  109 aagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa-ataaccgttgaca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  960525 aagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaatataaccgttgaca 960597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 13477982 - 13477829
Alignment:
Q  9 gagatgaacgaaaactggagacagcagatggcgtacgtataacgagagaatgaagactgcggaggtgaggtttagtgcatcatgcgttaggtacaaggat 108  Q
    |||||||||||||| || ||| |||||| ||||||||||||||| ||||||||||||  |||   || |||| ||||||||| || | |||||||||| |    
T  13477982 gagatgaacgaaaattgcagatagcagacggcgtacgtataacgtgagaatgaagacaacgg---tgtggtt-agtgcatcacgcat-aggtacaaggtt 13477888  T
Q  109 aagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa 167  Q
    ||||||||||| |  ||  ||||||||||||||||||||||||||||||||||||||||    
T  13477887 aagtgaattaataggagctattggatcaaatgaaatcaagggatatgatttggtgtcaa 13477829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 44701321 - 44701436
Alignment:
Q  51 cgagagaatgaagactgcggaggtgaggtttagtgcatcatgcgttaggtacaaggataagtgaattaacaatagtcattggatcaaatgaaatcaaggg 150  Q
    |||| |||||||||| | | || ||||||| ||||||||| ||||||||||||| | |||||||||||| || |||  | |||| |||||||||||||||    
T  44701321 cgagtgaatgaagacggtgaagatgaggttcagtgcatcacgcgttaggtacaaag-taagtgaattaataagagttgtcggattaaatgaaatcaaggg 44701419  T
Q  151 atatgatttggtgtcaa 167  Q
    |||||||||||||||||    
T  44701420 atatgatttggtgtcaa 44701436  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 959930 - 959857
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa-ataaccgttgaca 180  Q
    ||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  959930 taagtgaatgaacaggagccattggatcaaatgaaatcaagggatatgatttggtgtcaatataaccgttgaca 959857  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 33277462 - 33277518
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgt 164  Q
    ||||||||||||||| || |||||||| |||| |||||||  ||| |||||||||||    
T  33277462 taagtgaattaacaagagccattggattaaattaaatcaacagatgtgatttggtgt 33277518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 13545679 - 13545525
Alignment:
Q  9 gagatgaacgaaaactggagacagcagatggcgtacgtataacgagagaatgaagactgcggaggtgaggtttagtgcatcatgcgttaggtacaaggat 108  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||  |||   || |||| |||||||||  | | |||||||||| |    
T  13545679 gagatgaacgaaaactgcagatagcagacggcgtacgtataacgtgagaatgaagacgacgg---tgtggttcagtgcatcacacat-aggtacaaggtt 13545584  T
Q  109 aagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa 167  Q
    ||||||||||| |  ||  ||||||||||||||||||||||||||||||||||||||||    
T  13545583 aagtgaattaataggagctattggatcaaatgaaatcaagggatatgatttggtgtcaa 13545525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 27178602 - 27178675
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaaataa-ccgttgaca 180  Q
    ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| || |||||||||    
T  27178602 taagtgaattaacaagagccattggatcaaatgaaatcaagggacatgatttggtgtcaaacaatccgttgaca 27178675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 45921403 - 45921249
Alignment:
Q  9 gagatgaacgaaaactggagacagcagatggcgtacgtataacgagagaatgaagactgcggaggtgaggtttagtgcatcatgcgttaggtacaaggat 108  Q
    ||||||||||||||||| | | | |||| ||||||||||||||| ||||||||||||  |||   || |||| |||||||||  | | |||||||||| |    
T  45921403 gagatgaacgaaaactgcatatatcagacggcgtacgtataacgtgagaatgaagacgacgg---tgtggttcagtgcatcactcat-aggtacaaggtt 45921308  T
Q  109 aagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa 167  Q
    ||||||||||| |  ||  ||||||||||||||||||||||||||||||||||||||||    
T  45921307 aagtgaattaataggagctattggatcaaatgaaatcaagggatatgatttggtgtcaa 45921249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 31278112 - 31278171
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa 167  Q
    ||||||||||||||| || |||  |||||||||||||||||||| |||||||||||||||    
T  31278112 taagtgaattaacaagagccatccgatcaaatgaaatcaagggacatgatttggtgtcaa 31278171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 45099232 - 45099176
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgt 164  Q
    ||||||||||||||| || | |||||| |||| ||||||| |||| |||||||||||    
T  45099232 taagtgaattaacaagagcctttggattaaattaaatcaatggatgtgatttggtgt 45099176  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 17172620 - 17172679
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgtcaa 167  Q
    ||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||    
T  17172620 taagtgaattaacaagagccattggatcaaatgaaatcaagggacatgatttggcgtcaa 17172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 12761454 - 12761510
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgt 164  Q
    ||||||||||||||| |||| |||||| |||| ||||||| |||| |||||||||||    
T  12761454 taagtgaattaacaagagtctttggattaaattaaatcaacggatgtgatttggtgt 12761510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 37852617 - 37852561
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgt 164  Q
    ||||||||||||||| || |||||||| |||| ||||||| |||| |||||||||||    
T  37852617 taagtgaattaacaagagccattggattaaattaaatcaacggatgtgatttggtgt 37852561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 32979781 - 32979837
Alignment:
Q  108 taagtgaattaacaatagtcattggatcaaatgaaatcaagggatatgatttggtgt 164  Q
    ||||||||||||||| || | |||||| |||| ||||||| |||| |||||||||||    
T  32979781 taagtgaattaacaagagcctttggattaaattaaatcaatggatgtgatttggtgt 32979837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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