View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_high_12 (Length: 317)
Name: NF13112_high_12
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 29945837 - 29945537
Alignment:
| Q |
1 |
gaaaacagcttgcattagatcaaagctggaacacagccatcatgattacaagacacggcattaacagccnnnnnnncagaggacagagggctattaggag |
100 |
Q |
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| T |
29945837 |
gaaaacagcttgcattagatcaaagctggaacacagccatcatgattacaagacacggcattaacagccaaaaaaacagaggacagagggctattaggag |
29945738 |
T |
|
| Q |
101 |
ctaccccatgccaggttctattacccacaatcttagccaaagaagccaaattatgagcatcaccattgtgatttctactaacaaacataacagaaacatc |
200 |
Q |
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| T |
29945737 |
ctaccccatgccaggttctattacccacaatcttagccaaagaagccaaattatgagcatcaccattgtgatttctactaacaaacataacagaaacatc |
29945638 |
T |
|
| Q |
201 |
taacatagtggacataaggtccctacagtcttggactatgagattaatggctgcaaaagttgttcttccattgacagcattgacaacattgcttgcatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29945637 |
taacatagtggacataaggtccctacagtcttggactatgagattaatggctgcaaaagttgttcttccattgacagcattgacaacattgcttgcatca |
29945538 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
29945537 |
g |
29945537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 53323546 - 53323272
Alignment:
| Q |
29 |
gaacacagccatcatgattacaagacacggcattaacagccnnnnnnncagaggacagagggctattaggagctaccccatgccaggttctattacccac |
128 |
Q |
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||||||| ||||||||| |||||| |||| ||||| ||||| ||||| ||| || ||||||||||||||| |||| ||||||||||| |||||| |
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| T |
53323546 |
gaacacaaccatcatgagtacaaggcacgacattagcagccgaattaacagagaacatagagctattaggagctactccataccaggttctatcacccac |
53323447 |
T |
|
| Q |
129 |
aatcttagccaaagaagccaaattatgagcatcaccattgtgatttctactaacaaacataacagaaacatctaacatagtggacataaggtccctaca- |
227 |
Q |
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||| |||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||| || ||||||||||||| ||||||||||||||| | |
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| T |
53323446 |
catcctagccaaagaagccaaattatgggcatcacagttgtgattcctacaaacaaacataacataagcatctaacatagtagacataaggtccctataa |
53323347 |
T |
|
| Q |
228 |
-gtcttggactatgagattaatggctgcaaaagttgttcttccattgacagcattgacaacattgcttgcatcag |
301 |
Q |
| |
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| | |||||||| |||||| ||||||||||||| | ||||||||| || |||||||||||||||||||||| |
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| T |
53323346 |
tgcaatagactatgaaattaatagctgcaaaagttgatattccattgatagagttgacaacattgcttgcatcag |
53323272 |
T |
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