View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13112_high_6 (Length: 410)

Name: NF13112_high_6
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13112_high_6
NF13112_high_6
[»] chr4 (8 HSPs)
chr4 (1-185)||(31150442-31150626)
chr4 (258-410)||(31150704-31150856)
chr4 (1-133)||(31161736-31161868)
chr4 (27-132)||(31034102-31034207)
chr4 (109-159)||(31159451-31159501)
chr4 (1-67)||(31476882-31476948)
chr4 (47-137)||(31528549-31528639)
chr4 (363-403)||(31162086-31162126)
[»] chr6 (2 HSPs)
chr6 (327-364)||(12781883-12781920)
chr6 (359-403)||(12781930-12781974)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 31150442 - 31150626
Alignment:
Q  1 tcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150442 tcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaaca 31150541  T
Q  101 tatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150542 tatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca 31150626  T

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Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 258 - 410
Target Start/End: Original strand, 31150704 - 31150856
Alignment:
Q  258 ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150704 ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca 31150803  T
Q  358 tcaataaggaagattacttacttataacgtacatcccatccagagagattggc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150804 tcaataaggaagattacttacttataacgtacatcccatccagagagattggc 31150856  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31161736 - 31161868
Alignment:
Q  1 tcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaaca 100  Q
    ||||||| ||| |||||||||||||||||||||||||| | |  | |||||| ||||||  ||||||  ||||||||| | | | ||||||||||||  |    
T  31161736 tcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcccagctaaataatttggaagacttgtagacttgtaacccagta 31161835  T
Q  101 tatttacaatctcttcaacgatcttttcaatct 133  Q
    |||| | ||| ||||| ||||||||||||||||    
T  31161836 tattcataatttcttcgacgatcttttcaatct 31161868  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 31034102 - 31034207
Alignment:
Q  27 tttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttt 126  Q
    |||||||||||| | || | ||||||  ||||| ||||||| |||||||||| | ||||||  |||||||||  ||||||  ||||||||||| ||||||    
T  31034102 tttttctaattcttctataagagaatcaatcccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttt 31034201  T
Q  127 tcaatc 132  Q
    ||||||    
T  31034202 tcaatc 31034207  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 31159451 - 31159501
Alignment:
Q  109 atctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta 159  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  31159451 atctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta 31159501  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31476948 - 31476882
Alignment:
Q  1 tcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaat 67  Q
    |||||||  ||||||||||||||| | ||||||||||| |||  |||||||| |||||| |||||||    
T  31476948 tcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaat 31476882  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 31528549 - 31528639
Alignment:
Q  47 gagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgc 137  Q
    |||||||| |||| |||||||  ||||||||  | ||||| ||| ||  ||| |||||||| ||||||||||| ||||||| |||||||||    
T  31528549 gagaatgcgtcccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgc 31528639  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 31162086 - 31162126
Alignment:
Q  363 aaggaagattacttacttataacgtacatcccatccagaga 403  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  31162086 aaggaagattacttacttatgacgcacatcccaaccagaga 31162126  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 12781883 - 12781920
Alignment:
Q  327 caaagctttaaaatttgcacatgtaagtgcatcaataa 364  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  12781883 caaagctttaaaatttgcacaagtaattgcatcaataa 12781920  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 12781930 - 12781974
Alignment:
Q  359 caataaggaagattacttacttataacgtacatcccatccagaga 403  Q
    |||||||||||||| ||||||||| ||||| |||||| |||||||    
T  12781930 caataaggaagattgcttacttatcacgtagatcccagccagaga 12781974  T

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