View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_10 (Length: 395)
Name: NF13112_low_10
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 34650065 - 34650435
Alignment:
| Q |
11 |
cacagacaaaggaagcaatgaccaccaccaaacaggttaatttacattgcatgatga---atgcacgtatattactataataataatatagatctcatct |
107 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
34650065 |
cacaaacaaaggaaacaatgaccaccaccaaacaggttaatttacattgcatgatgatgaatgcacgtatattactataa---taatatagatctcatct |
34650161 |
T |
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| Q |
108 |
aataatttattatacattgaatttgtgcagatggatgtagagagaaatgatcatgaaaaactgaagcatcttgggtttgtgagaattgctgctattcatg |
207 |
Q |
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| T |
34650162 |
aataatttattatacattgaatttgtgcagatggatgtagagagaaatgatcatgaaaaactgaagcatcttgggtttgtgagaattgctgctattcatg |
34650261 |
T |
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| Q |
208 |
cttttgtttgcatgtcgagtctgtatgactatgcaaaacaaaactcaggacctttgagatctgctgttggaaccgttgaaggtactgtcactacggttct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34650262 |
cttttgtttgcatgtcgagtctgtatgactatgcaaaacaaaactcaggacctttgagatctgctgttggaaccgttgaaggtactgtcactaccgttct |
34650361 |
T |
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| Q |
308 |
tggtcctgtttacaacaaattcaagcctcttcctcaagatctccttgnnnnnnncgacaacaaggtctctttct |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34650362 |
tggtcctgtttacaacaaattcaagcctcttcctcaagatctccttgtttttttcgacaacaaggtctctttct |
34650435 |
T |
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