View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_12 (Length: 338)
Name: NF13112_low_12
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 3273476 - 3273168
Alignment:
| Q |
10 |
catcatcaaattgaagtatatgtcttatctttaatctaagttggtatannnnnnnnnnnaa-atgtttatatatctaatttgttctaattaggaaaaata |
108 |
Q |
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| T |
3273476 |
catcataaaattgaagtatatgtcttatctttaatctaagttggtattttttttttttttacatgtttatatatataatttgttctaatcaggaaaaata |
3273377 |
T |
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| Q |
109 |
attaattgtgattgtttataggaatggttagaccaatatccaaaagaagcttctgttttaagatcagcaggtggaggaaattggtttcaccagtttagag |
208 |
Q |
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| T |
3273376 |
a---attgtgattgtttataggaatggttagaccaatatccaaaagaagcttctgttttaagatcagctggtggaggaaattggtttcaccagtttagag |
3273280 |
T |
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| Q |
209 |
cagttgctttaatcagggtttctccattcccttacatgatctataactattgtgctactgcaacaaatgttcaatatggtccttacttgtgtggatcttt |
308 |
Q |
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| T |
3273279 |
cagttgctttaatcagggtttctccattcccttacatgatctataactattgtgctactgcaacaaatgttcaatatggtccttacttgtgtggatcttt |
3273180 |
T |
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| Q |
309 |
ggcaggaatgtt |
320 |
Q |
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| T |
3273179 |
ggcaggaatgtt |
3273168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 42166037 - 42165890
Alignment:
| Q |
132 |
atggttagaccaatatccaaaagaagcttctgttttaagatcagcaggtggaggaaattggtttcaccagtttagagcagttgctttaatcagggtttct |
231 |
Q |
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| T |
42166037 |
atggttagagaagtatccaaagaaggcttctattctaaaatctgctggtgcaggaaactggtttcatcagtttagagctgttgccttaatcaggatttct |
42165938 |
T |
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| Q |
232 |
ccattcccttacatgatctataactattgtgctactgcaacaaatgtt |
279 |
Q |
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| T |
42165937 |
ccgttcccttatatggtcttcaattactgtgctgtggcaacaaatgtt |
42165890 |
T |
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