View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_15 (Length: 289)
Name: NF13112_low_15
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_15 |
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| [»] scaffold0227 (1 HSPs) |
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| [»] scaffold1195 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 29526838 - 29526579
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
111 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29526838 |
agagaaaaatgaggaaaaggtagagaatgcagaagaaagggatgcggaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
29526739 |
T |
|
| Q |
112 |
gatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggag |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
29526738 |
gatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaactatcggag |
29526639 |
T |
|
| Q |
212 |
agggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatc |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
29526638 |
agggatgggtttcactcgagttgggcggcctacctccaccgccgccaaagccgccagatc |
29526579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 39702372 - 39702187
Alignment:
| Q |
57 |
agaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacat |
156 |
Q |
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||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||| ||| |||||||| |
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| T |
39702372 |
agaaagttcctctgtgaatgtcatcaatgtggaaaagcaacaagagaccaaagtagatttgtgcaaatttcttggtatcaacaaactatttgatgaacat |
39702273 |
T |
|
| Q |
157 |
ggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcct |
242 |
Q |
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|| || ||| ||||| ||||| ||||| | ||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| |
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| T |
39702272 |
ggcgtgagtattgtgttcgaattgagggtgggattgcctagaacaactaccggagagggatgggtttcacttgagttggacggcct |
39702187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 6081827 - 6082074
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
111 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6081827 |
agagaaaaatgaggaaaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
6081926 |
T |
|
| Q |
112 |
gatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggag |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
6081927 |
gatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaactatcggag |
6082026 |
T |
|
| Q |
212 |
agggatgggtttcactcgagttgggcggcctacctccaccaccgccaa |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6082027 |
agggatgggtttcactcgagttgggcggcctacctccaccgccgccaa |
6082074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 15432485 - 15432551
Alignment:
| Q |
15 |
gaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
81 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
15432485 |
gaaaaatgaggaaaaggcagagaatgcataagaaagggatgcagaaaattcctctgtgaatgtcatc |
15432551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 15490838 - 15490904
Alignment:
| Q |
15 |
gaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
81 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
15490838 |
gaaaaatgaggaaaaggtagagaatgcataagaaagggatgcagaaaaatcctctgtgaatgtcatc |
15490904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 15567501 - 15567570
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
81 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||| ||||||| |||| |
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| T |
15567501 |
agagaaaaacgaggaaaaggtagagaatgcataataaagggatgcagaaaattcctctgtgaatgccatc |
15567570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 11702 - 11929
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
11801 |
T |
|
| Q |
112 |
gatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggag |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
11802 |
gatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcaaaattgcctagaaaaactatcggag |
11901 |
T |
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| Q |
212 |
agggatgggtttcactcgagttgggcgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
11902 |
agggatgggtttcactcgagttgggcgg |
11929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 18132576 - 18132325
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18132576 |
agagaaaaatgaggaaaaggtagagaacacagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
18132477 |
T |
|
| Q |
112 |
gatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggag |
211 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||| |
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|
| T |
18132476 |
gatcagcgcaaatttcttggtatcgacagacttttttatgaacatggtatgagtagtgtgttcgaatcgatggcgaaattgcctagaaaaactatcggag |
18132377 |
T |
|
| Q |
212 |
agggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagcc |
263 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
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|
| T |
18132376 |
agggatgggtttcactcgagttgggcggcttacctccacggctgccaaagcc |
18132325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 10583326 - 10583572
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10583326 |
agagaaaaatgaggaaaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
10583425 |
T |
|
| Q |
112 |
gatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggag |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
10583426 |
gatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgaggg-cttcttgcctagaaaaactatcggag |
10583524 |
T |
|
| Q |
212 |
agggatgggtttcactcgagttgggcggcctacctccaccaccgccaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10583525 |
agggatgggtttcactcgagttgggcggcctacctccaccgccgccaa |
10583572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 49122754 - 49122858
Alignment:
| Q |
12 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagca |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
49122754 |
agagaaaaatgaggaaaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagta |
49122853 |
T |
|
| Q |
112 |
gatct |
116 |
Q |
| |
|
||||| |
|
|
| T |
49122854 |
gatct |
49122858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 49122859 - 49122942
Alignment:
| Q |
188 |
aattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatc |
271 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |
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|
| T |
49122859 |
aattgcctagaaaaactatcgaagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggccgccagatc |
49122942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1195
Description:
Target: scaffold1195; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 614 - 680
Alignment:
| Q |
15 |
gaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
81 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
614 |
gaaaaatgaggaaaaggtagagaatgcataagaaagggatgcagaaaattcctctgtgaatgtcatc |
680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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