View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13112_low_16 (Length: 278)

Name: NF13112_low_16
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13112_low_16
NF13112_low_16
[»] chr3 (27 HSPs)
chr3 (75-209)||(8400855-8400989)
chr3 (75-208)||(7417798-7417931)
chr3 (75-208)||(50823698-50823831)
chr3 (75-208)||(50852029-50852162)
chr3 (75-208)||(35198765-35198898)
chr3 (76-208)||(22855888-22856020)
chr3 (75-204)||(43334057-43334186)
chr3 (86-208)||(52545332-52545454)
chr3 (75-204)||(34824556-34824685)
chr3 (76-204)||(55468000-55468129)
chr3 (104-207)||(22371729-22371832)
chr3 (90-207)||(29635883-29636001)
chr3 (122-208)||(37330606-37330692)
chr3 (122-207)||(30534902-30534987)
chr3 (97-208)||(19872482-19872593)
chr3 (122-208)||(37454743-37454829)
chr3 (76-171)||(48077977-48078072)
chr3 (89-203)||(42876229-42876343)
chr3 (75-201)||(50726003-50726129)
chr3 (75-201)||(50786719-50786845)
chr3 (135-208)||(25910665-25910738)
chr3 (107-208)||(25589253-25589347)
chr3 (114-204)||(30203657-30203744)
chr3 (164-208)||(773666-773710)
chr3 (157-202)||(31297529-31297574)
chr3 (132-208)||(39438828-39438903)
chr3 (135-203)||(14848552-14848620)
[»] chr7 (18 HSPs)
chr7 (75-208)||(35109691-35109824)
chr7 (75-207)||(38265237-38265369)
chr7 (75-208)||(41151172-41151306)
chr7 (75-204)||(16059356-16059485)
chr7 (75-208)||(21577097-21577230)
chr7 (75-208)||(34721834-34721967)
chr7 (93-208)||(37095209-37095324)
chr7 (75-203)||(12472121-12472249)
chr7 (75-204)||(18116947-18117076)
chr7 (75-204)||(38405157-38405286)
chr7 (88-208)||(245263-245383)
chr7 (75-208)||(45278452-45278585)
chr7 (77-202)||(11216771-11216896)
chr7 (75-204)||(48176399-48176529)
chr7 (76-208)||(23028684-23028816)
chr7 (107-208)||(28407540-28407637)
chr7 (113-203)||(24123021-24123117)
chr7 (165-208)||(39234853-39234896)
[»] chr2 (25 HSPs)
chr2 (75-208)||(45136969-45137102)
chr2 (77-208)||(17136389-17136520)
chr2 (75-208)||(40156040-40156173)
chr2 (75-208)||(25987660-25987794)
chr2 (75-208)||(36836328-36836461)
chr2 (76-208)||(10745231-10745363)
chr2 (76-208)||(21637898-21638030)
chr2 (75-198)||(6672802-6672925)
chr2 (75-208)||(2754050-2754183)
chr2 (75-210)||(44650393-44650528)
chr2 (76-208)||(36380131-36380263)
chr2 (75-208)||(5039420-5039553)
chr2 (76-208)||(26690155-26690287)
chr2 (97-208)||(558438-558549)
chr2 (78-208)||(3200884-3201014)
chr2 (75-208)||(2357075-2357207)
chr2 (75-208)||(7860145-7860278)
chr2 (76-205)||(30372682-30372811)
chr2 (77-208)||(33066592-33066723)
chr2 (76-207)||(13047156-13047282)
chr2 (108-208)||(21487181-21487282)
chr2 (158-209)||(2098824-2098875)
chr2 (100-204)||(4553561-4553666)
chr2 (90-145)||(20961496-20961551)
chr2 (113-153)||(30477240-30477280)
[»] chr8 (21 HSPs)
chr8 (75-208)||(19723311-19723444)
chr8 (76-208)||(11404002-11404134)
chr8 (77-208)||(32296638-32296769)
chr8 (75-207)||(4840140-4840272)
chr8 (77-208)||(29767190-29767319)
chr8 (93-204)||(17095568-17095679)
chr8 (75-208)||(22711509-22711642)
chr8 (78-204)||(28739564-28739690)
chr8 (108-208)||(36261679-36261779)
chr8 (76-208)||(41553286-41553418)
chr8 (104-187)||(21355004-21355087)
chr8 (78-208)||(30682842-30682971)
chr8 (108-208)||(43288105-43288205)
chr8 (75-208)||(11610280-11610413)
chr8 (121-204)||(11909426-11909509)
chr8 (90-174)||(24475029-24475113)
chr8 (77-151)||(27881044-27881118)
chr8 (77-151)||(28021225-28021299)
chr8 (147-208)||(27879559-27879620)
chr8 (147-208)||(28019740-28019801)
chr8 (87-208)||(44741919-44742038)
[»] chr1 (18 HSPs)
chr1 (75-204)||(30054445-30054574)
chr1 (76-206)||(30370061-30370191)
chr1 (75-208)||(20014458-20014591)
chr1 (75-208)||(45324006-45324139)
chr1 (76-208)||(12025182-12025314)
chr1 (93-207)||(22024121-22024235)
chr1 (76-204)||(21090116-21090244)
chr1 (75-206)||(30850841-30850972)
chr1 (75-208)||(4573379-4573512)
chr1 (104-208)||(14498078-14498182)
chr1 (88-207)||(33763254-33763373)
chr1 (101-208)||(33762539-33762646)
chr1 (119-198)||(35371754-35371833)
chr1 (87-204)||(44438553-44438670)
chr1 (134-204)||(35618034-35618104)
chr1 (147-207)||(17015192-17015252)
chr1 (75-121)||(15034455-15034501)
chr1 (133-203)||(17291828-17291897)
[»] chr5 (12 HSPs)
chr5 (75-208)||(17064323-17064456)
chr5 (78-204)||(20983006-20983132)
chr5 (75-208)||(37976546-37976683)
chr5 (116-209)||(41910865-41910958)
chr5 (108-202)||(31673863-31673956)
chr5 (92-208)||(5009416-5009531)
chr5 (85-203)||(39162859-39162977)
chr5 (164-207)||(35237059-35237102)
chr5 (76-127)||(35237103-35237154)
chr5 (151-206)||(38255559-38255614)
chr5 (108-165)||(18303352-18303409)
chr5 (96-203)||(32326563-32326671)
[»] chr6 (9 HSPs)
chr6 (75-208)||(35163749-35163882)
chr6 (96-208)||(20685346-20685458)
chr6 (77-207)||(19686827-19686957)
chr6 (97-208)||(17948702-17948813)
chr6 (75-208)||(2711739-2711866)
chr6 (102-204)||(15070152-15070254)
chr6 (75-208)||(14505524-14505655)
chr6 (75-129)||(14496352-14496406)
chr6 (100-178)||(24336640-24336718)
[»] chr4 (29 HSPs)
chr4 (75-204)||(46494401-46494530)
chr4 (75-204)||(51066493-51066622)
chr4 (76-207)||(36192542-36192673)
chr4 (75-208)||(51713964-51714097)
chr4 (75-208)||(7173584-7173717)
chr4 (75-208)||(30970383-30970516)
chr4 (75-208)||(32139164-32139297)
chr4 (75-208)||(39863777-39863910)
chr4 (75-208)||(50905748-50905881)
chr4 (75-177)||(8740448-8740550)
chr4 (104-208)||(29576444-29576548)
chr4 (103-208)||(55231715-55231820)
chr4 (90-208)||(2570216-2570334)
chr4 (75-208)||(47626992-47627127)
chr4 (131-208)||(22304090-22304167)
chr4 (113-208)||(676766-676861)
chr4 (76-204)||(2294719-2294841)
chr4 (101-204)||(41523423-41523526)
chr4 (86-205)||(51279035-51279154)
chr4 (86-203)||(50399646-50399763)
chr4 (108-208)||(4080551-4080651)
chr4 (77-178)||(22423378-22423479)
chr4 (229-277)||(7141724-7141772)
chr4 (142-204)||(23084468-23084530)
chr4 (139-203)||(37990599-37990663)
chr4 (161-204)||(51066240-51066283)
chr4 (110-208)||(40012548-40012645)
chr4 (154-199)||(28202598-28202643)
chr4 (120-201)||(28202701-28202782)
[»] scaffold0021 (1 HSPs)
scaffold0021 (76-208)||(107691-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (77-182)||(6994-7099)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 8400855 - 8400989
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400855 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 8400954  T
Q  175 ggactggggcaccatcccctcaccctaaaatttta 209  Q
    |||||||||||||||||||||||||||||||||||    
T  8400955 ggactggggcaccatcccctcaccctaaaatttta 8400989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 7417798 - 7417931
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7417798 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgcctt 7417897  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  7417898 ggactggggcaccatcccctcaccctaaaatttt 7417931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 50823698 - 50823831
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823698 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 50823797  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  50823798 ggactggggcaccatcccctcaccctaaaatttt 50823831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 50852162 - 50852029
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852162 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 50852063  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  50852062 ggactggggcaccatcccctcaccctaaaatttt 50852029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 35198765 - 35198898
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35198765 ccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35198864  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  35198865 ggactggagcaccatcccctcaccctaaaatttt 35198898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 22855888 - 22856020
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  22855888 cgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttg 22855987  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| ||||||||||||||||||||||||||    
T  22855988 gactggagcaccatcccctcaccctaaaatttt 22856020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 43334186 - 43334057
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  43334186 ccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgcctt 43334087  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||| ||||||||||||||||||||    
T  43334086 ggactggggtaccatcccctcaccctaaaa 43334057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 52545332 - 52545454
Alignment:
Q  86 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 185  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52545332 cgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggca 52545431  T
Q  186 ccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||||    
T  52545432 ccatcccctcaccctaaaatttt 52545454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 34824556 - 34824685
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| | ||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  34824556 ccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggcctt 34824655  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  34824656 ggactggggcaccatcccctcaccctaaaa 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 55468000 - 55468129
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgag-cccgaaggtcttccctgcctt 174  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  55468000 cgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgcctt 55468099  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  55468100 ggactggggcaccatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 22371832 - 22371729
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  204 attt 207  Q
    ||||    
T  22371732 attt 22371729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 29635883 - 29636001
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc-a 188  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaa 29635982  T
Q  189 tcccctcaccctaaaattt 207  Q
    | ||||||| |||||||||    
T  29635983 ttccctcacgctaaaattt 29636001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 37330692 - 37330606
Alignment:
Q  122 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 37330606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 30534987 - 30534902
Alignment:
Q  122 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaattt 30534902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 19872593 - 19872482
Alignment:
Q  97 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 196  Q
    |||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  19872593 cccgcttgtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctca 19872494  T
Q  197 ccctaaaatttt 208  Q
     |||||||||||    
T  19872493 tcctaaaatttt 19872482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 37454829 - 37454743
Alignment:
Q  122 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaatttt 37454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 48078072 - 48077977
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 171  Q
    ||||||||| |||||||||||| | |||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  48078072 cgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 42876229 - 42876343
Alignment:
Q  89 gttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca 188  Q
    ||||||||||  |||||| |||| || ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||  |||||||| ||||||||    
T  42876229 gttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcacca 42876328  T
Q  189 tcccctcaccctaaa 203  Q
    ||| |||||||||||    
T  42876329 tcctctcaccctaaa 42876343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 50726129 - 50726003
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||    
T  50726129 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctacttt 50726030  T
Q  175 ggactggggcaccatcccctcacccta 201  Q
    ||| |||||||||||||| ||||||||    
T  50726029 ggattggggcaccatcccttcacccta 50726003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 50786719 - 50786845
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||    
T  50786719 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctacttt 50786818  T
Q  175 ggactggggcaccatcccctcacccta 201  Q
    ||| |||||||||||||| ||||||||    
T  50786819 ggattggggcaccatcccttcacccta 50786845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 25910738 - 25910665
Alignment:
Q  135 tttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaatttt 25910665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 25589253 - 25589347
Alignment:
Q  107 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 206  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||| ||||       ||||||||||||| |||||||| ||||||||||||||||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga-------ccctgccttggacgggggcaccctcccctcaccctaaaatt 25589345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 30203744 - 30203657
Alignment:
Q  114 agggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||  |||||||||| || ||||||||| ||||||| |||| || |||| ||||||||||||||||||||| ||||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcactctaaaa 30203657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 773666 - 773710
Alignment:
Q  164 ttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccctagaatttt 773710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 31297574 - 31297529
Alignment:
Q  157 gaaggtcttccctgccttggactggggcaccatcccctcaccctaa 202  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccctaa 31297529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 39438903 - 39438828
Alignment:
Q  132 acctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||| ||||| |  || || ||||| ||| ||||| ||||||||||||| ||||||||||||||||||    
T  39438903 acctttgtaagtgttctttaaatccaaaagtctttcctaccttgaactggggcaccat-ccctcaccctaaaatttt 39438828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 14848552 - 14848620
Alignment:
Q  135 tttgtaagtgctctttgagcccgaaggtcttccctgccttggact-ggggcaccatcccctcaccctaaa 203  Q
    ||||| ||||| ||||||||| |||||| || ||||||||||||| ||||||||| ||||| ||||||||    
T  14848552 tttgtgagtgccctttgagcctgaaggtttttcctgccttggactaggggcacca-ccccttaccctaaa 14848620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 35109691 - 35109824
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109691 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35109790  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  35109791 ggactggggcaccatcccctcaccctaaaatttt 35109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 38265369 - 38265237
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265369 ccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 38265270  T
Q  175 ggactggggcaccatcccctcaccctaaaattt 207  Q
    |||||||||||||||||||||||||||||||||    
T  38265269 ggactggggcaccatcccctcaccctaaaattt 38265237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 41151172 - 41151306
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattaccttt-gtaagtgctctttgagcccgaaggtcttccctgcct 173  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41151172 ccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgcct 41151271  T
Q  174 tggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||||||||||| ||||    
T  41151272 tggactggggcaccatcccctcaccctaaattttt 41151306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 16059485 - 16059356
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  16059485 ccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctacctt 16059386  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  16059385 ggactggggcaccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 21577230 - 21577097
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  21577230 ccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgcctt 21577131  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  21577130 ggactggggcaccatcccctcaccctaaaatttt 21577097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 34721834 - 34721967
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34721834 ccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgcctt 34721933  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||| ||||||||||||||||||||||||||||    
T  34721934 ggactcgggcaccatcccctcaccctaaaatttt 34721967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 37095324 - 37095209
Alignment:
Q  93 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 192  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 37095225  T
Q  193 ctcaccctaaaatttt 208  Q
    ||||||||||||||||    
T  37095224 ctcaccctaaaatttt 37095209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 12472121 - 12472249
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  12472121 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtctt 12472220  T
Q  175 ggactggggcaccatcccctcaccctaaa 203  Q
    ||||||||| |||||||||||||||||||    
T  12472221 ggactggggtaccatcccctcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 18117076 - 18116947
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  18117076 ccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgcctt 18116977  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  18116976 ggactggggcaccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 38405286 - 38405157
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||  || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  38405286 ccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgcctt 38405187  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  38405186 ggactggggcaccatcccctcaccctaaaa 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 245383 - 245263
Alignment:
Q  88 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 187  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  188 atcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||    
T  245283 atcccctcaccctaaaatttt 245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 45278452 - 45278585
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  45278452 ccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgcctt 45278551  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  45278552 ggactggagcaccatcccctcaccctaaaatttt 45278585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 11216771 - 11216896
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||    
T  11216771 gagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttgg 11216870  T
Q  177 actggggcaccatcccctcaccctaa 202  Q
    ||| ||||| ||| ||||||||||||    
T  11216871 actagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 48176399 - 48176529
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccct-gcct 173  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| | |||||||| |||||| ||||||  |||    
T  48176399 ccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctcccct 48176498  T
Q  174 tggactggggcaccatcccctcaccctaaaa 204  Q
    |||||||||||||||||||||||||||||||    
T  48176499 tggactggggcaccatcccctcaccctaaaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 23028684 - 23028816
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| |||||||||| | || ||| ||||||| |||||| |||||||||||||||||| |||||| | ||||| |||||||| ||||||| ||||     
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctacctta 23028783  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||| | |||||||| |||| |||||||||||    
T  23028784 gactgagacaccatcctctcatcctaaaatttt 23028816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 28407540 - 28407637
Alignment:
Q  107 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 206  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||    |  |||||||| ||||||||||||||||||||||||||||    
T  28407540 cctttagagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcaccctaaaatt 28407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 24123021 - 24123117
Alignment:
Q  113 gagggaggtaaatgtaattacctttgtaagtgctctttgagcc------cgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 203  Q
    |||| ||||||||||||||||||||||||||  |||||||  |      ||||||||||| |||||||||| |||| |||||||| |||||||||||    
T  24123021 gaggaaggtaaatgtaattacctttgtaagtattctttgaatctgaattcgaaggtcttctctgccttggattgggtcaccatcctctcaccctaaa 24123117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 39234853 - 39234896
Alignment:
Q  165 tccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  39234853 tccctgccatggactggggcaccatcccctcacccaaaaatttt 39234896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 45137102 - 45136969
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137102 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 45137003  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||| |||||||||||||||    
T  45137002 ggactggggcaccatcccttcaccctaaaatttt 45136969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 17136389 - 17136520
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17136389 gagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttgg 17136488  T
Q  177 actggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||    
T  17136489 actggggcaccatcccctcaccctaaaatttt 17136520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 40156040 - 40156173
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40156040 ccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctacctt 40156139  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    | |||||||||||||||||||||| |||||||||    
T  40156140 gaactggggcaccatcccctcaccataaaatttt 40156173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 25987794 - 25987660
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc-ttccctgcct 173  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  25987794 ccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgcct 25987695  T
Q  174 tggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||| |||||||||||||||||||||||||||||||    
T  25987694 tggtctggggcaccatcccctcaccctaaaatttt 25987660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 36836461 - 36836328
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36836461 ccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgcctt 36836362  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||||| |||||||||    
T  36836361 ggactggggcaccatcccctcaccttaaaatttt 36836328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 10745363 - 10745231
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  10745363 cgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttg 10745264  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||||||||||||||    
T  10745263 gactggggcaccatcccctcaccctaaaatttt 10745231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 21637898 - 21638030
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  21637898 cgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttg 21637997  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    |||| ||||||||||||||||||||||||||||    
T  21637998 gactagggcaccatcccctcaccctaaaatttt 21638030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 6672925 - 6672802
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  6672925 ccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgcctt 6672826  T
Q  175 ggactggggcaccatcccctcacc 198  Q
    ||||||||||||||||||||||||    
T  6672825 ggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 2754183 - 2754050
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2754183 ccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgcctt 2754084  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  2754083 ggactggggcaccatcccctcaccctaaaatttt 2754050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 44650393 - 44650528
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44650393 ccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgcctt 44650492  T
Q  175 ggactggggcaccatcccctcaccctaaaattttac 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  44650493 ggaccggggcaccatcccctcaccctaaaattttac 44650528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 36380263 - 36380131
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  36380263 cgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttg 36380164  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||| |||||||||||||||||||||||||||    
T  36380163 gactgaggcaccatcccctcaccctaaaatttt 36380131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 5039420 - 5039553
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5039420 ccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctacctt 5039519  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||| ||||||||||||||||| ||||||||||    
T  5039520 ggactagggcaccatcccctcactctaaaatttt 5039553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 26690155 - 26690287
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  26690155 cgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttg 26690254  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||| |||||||||||||||||||||||||||    
T  26690255 gactgaggcaccatcccctcaccctaaaatttt 26690287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 558549 - 558438
Alignment:
Q  97 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||    
T  558549 cccgctagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctca 558450  T
Q  197 ccctaaaatttt 208  Q
    ||||||||||||    
T  558449 ccctaaaatttt 558438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 3200884 - 3201014
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||    
T  3200884 agagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttaga 3200983  T
Q  178 ctggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||| |||| ||||||||||||    
T  3200984 ctggggcaccatctcctcgccctaaaatttt 3201014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 2357207 - 2357075
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||  || ||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||  |||||||||||| ||||||    
T  2357207 ccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgcctt 2357109  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  2357108 ggactggggcaccatcccctcaccctaaaatttt 2357075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 7860278 - 7860145
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||| | ||| |||||||    
T  7860278 ccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgcctt 7860179  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| |||| ||||||||| ||||||||||||    
T  7860178 ggactgaggcatcatcccctctccctaaaatttt 7860145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 30372811 - 30372682
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||| || |||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||    
T  30372811 cgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttg 30372712  T
Q  176 gactggggcaccatcccctcaccctaaaat 205  Q
     ||||||| ||||| |||||||||||||||    
T  30372711 aactggggtaccataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 33066592 - 33066723
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||| ||||||||||||  | |||||| |||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| || ||||||    
T  33066592 gagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttgg 33066691  T
Q  177 actggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||| |||||||||||    
T  33066692 actggggcaccatcccctcatcctaaaatttt 33066723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 13047282 - 13047156
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| |||||||||||||||||  ||  |||||||||||||||||| ||||||||||   ||||||||||||||||| ||| ||||||||||||||    
T  13047282 cgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttg 13047188  T
Q  176 gactggggcaccatcccctcaccctaaaattt 207  Q
    |||||| |||||||||||||||||||||||||    
T  13047187 gactggagcaccatcccctcaccctaaaattt 13047156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 21487181 - 21487282
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat-cccctcaccctaaaatt 206  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaatt 21487280  T
Q  207 tt 208  Q
    ||    
T  21487281 tt 21487282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 2098875 - 2098824
Alignment:
Q  158 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttta 2098824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 4553666 - 4553561
Alignment:
Q  100 gctagtgcctttggagg-gaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 198  Q
    |||||||  |||||||| ||||||||| ||| ||| ||||||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||||||||||     
T  4553666 gctagtgtttttggaggagaggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcact 4553567  T
Q  199 ctaaaa 204  Q
    ||||||    
T  4553566 ctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 20961496 - 20961551
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgc 145  Q
    ||||||| ||||||||||| |||||||||||||||||||| | | |||||||||||    
T  20961496 ttcgagctccgctagtgcccttggagggaggtaaatgtaaatccatttgtaagtgc 20961551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 30477280 - 30477240
Alignment:
Q  113 gagggaggtaaatgtaattacctttgtaagtgctctttgag 153  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  30477280 gagggaggtaaatctaaatacctttgtaagttctctttgag 30477240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 19723311 - 19723444
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  19723311 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgcctt 19723410  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  19723411 ggactggggcaccatcccctcaccctaaaatttt 19723444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 11404002 - 11404134
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11404002 cgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 11404101  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||||||||||||||    
T  11404102 gactggggcaccatcccctcaccctaaaatttt 11404134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 32296769 - 32296638
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32296769 gagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 32296670  T
Q  177 actggggcaccatcccctcaccctaaaatttt 208  Q
    | ||||||||||||||||||||||||||||||    
T  32296669 attggggcaccatcccctcaccctaaaatttt 32296638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 4840140 - 4840272
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||    
T  4840140 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgcctt 4840239  T
Q  175 ggactggggcaccatcccctcaccctaaaattt 207  Q
    ||||| |||||||||||||||||||||||||||    
T  4840240 ggactagggcaccatcccctcaccctaaaattt 4840272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 29767190 - 29767319
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29767190 gagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttgg 29767287  T
Q  177 actggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||    
T  29767288 actggggcaccatcccctcaccctaaaatttt 29767319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 17095568 - 17095679
Alignment:
Q  93 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 17095667  T
Q  193 ctcaccctaaaa 204  Q
    ||||||||||||    
T  17095668 ctcaccctaaaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 22711509 - 22711642
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| |||||| ||| ||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  22711509 ccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgcctt 22711608  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||| |||||||||||    
T  22711609 ggactggggcaccatcccctcatcctaaaatttt 22711642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 28739690 - 28739564
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    |||||||| |||||| |||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28739690 agagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttgga 28739591  T
Q  178 ctggggcaccatcccctcaccctaaaa 204  Q
    |||  ||||||||||||||||||||||    
T  28739590 ctgcagcaccatcccctcaccctaaaa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 36261679 - 36261779
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaattt 36261778  T
Q  208 t 208  Q
    |    
T  36261779 t 36261779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 41553286 - 41553418
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||| ||||||| ||| ||| || ||||||||| | |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||     
T  41553286 cgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgcctta 41553385  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| ||||||||||||||||||||||||||    
T  41553386 gactggagcaccatcccctcaccctaaaatttt 41553418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 30682842 - 30682971
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    ||||| |||| ||||||||||| || |||||||||||| ||| ||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  30682842 agagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttgga 30682941  T
Q  178 ctggggcaccatcccctcaccctaaaatttt 208  Q
    || |||||||||||||||||| |||||||||    
T  30682942 ct-gggcaccatcccctcaccttaaaatttt 30682971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 43288105 - 43288205
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 207  Q
    |||||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaatttt 43288204  T
Q  208 t 208  Q
    |    
T  43288205 t 43288205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 11610280 - 11610413
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||| | ||| |||||||| |||||||||||||||||  |||||||| ||| || ||||||||||||| ||| |||||||||||||| | |  |||    
T  11610280 ccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttatctt 11610379  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  11610380 ggactggggcaccatcccctcaccctaaaatttt 11610413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 11909509 - 11909426
Alignment:
Q  121 taaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 24475113 - 24475029
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 27881118 - 27881044
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  27881118 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 28021299 - 28021225
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  28021299 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 27879620 - 27879559
Alignment:
Q  147 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttt 27879559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 28019801 - 28019740
Alignment:
Q  147 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttt 28019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 44742038 - 44741919
Alignment:
Q  87 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 186  Q
    ||||||||||| ||||||||||||||||| || || ||| | | | |||||||||||||||    || || | |||||| |||||||||||||||||  |    
T  44742038 gggttcgagcctcgctagtgcctttggagagaagttaatattaatccctttgtaagtgctcca--agtcctatggtcttacctgccttggactggggtgc 44741941  T
Q  187 catcccctcaccctaaaatttt 208  Q
    ||||||||||||||||| ||||    
T  44741940 catcccctcaccctaaattttt 44741919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 30054574 - 30054445
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30054574 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgcctt 30054475  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  30054474 ggactggggcaccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 30370191 - 30370061
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370191 cgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 30370092  T
Q  176 gactggggcaccatcccctcaccctaaaatt 206  Q
    ||||||||||||||||||||||| |||||||    
T  30370091 gactggggcaccatcccctcaccttaaaatt 30370061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 20014458 - 20014591
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  20014458 ccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgcctt 20014557  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| |||||||||||||||||||||||||||    
T  20014558 ggactgaggcaccatcccctcaccctaaaatttt 20014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 45324006 - 45324139
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  45324006 ccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgcttt 45324105  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  45324106 ggactggggcaccatcccctcaccctaaaatttt 45324139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 12025182 - 12025314
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12025182 cgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttg 12025281  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||| |||||||||||||||||||    
T  12025282 gactggggcaccaccccctcaccctaaaatttt 12025314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 22024121 - 22024235
Alignment:
Q  93 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 192  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22024121 gagccctgctagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatccc 22024220  T
Q  193 ctcaccctaaaattt 207  Q
    |||||||||||||||    
T  22024221 ctcaccctaaaattt 22024235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 21090116 - 21090244
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  21090116 cgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttg 21090215  T
Q  176 gactggggcaccatcccctcaccctaaaa 204  Q
    |||||||||||||||||||||| ||||||    
T  21090216 gactggggcaccatcccctcactctaaaa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 30850972 - 30850841
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||    
T  30850972 ccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtctt 30850873  T
Q  175 ggactggggcaccatcccctcaccctaaaatt 206  Q
    ||||||||||||||||||||||||||||||||    
T  30850872 ggactggggcaccatcccctcaccctaaaatt 30850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 4573379 - 4573512
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||    
T  4573379 ccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgtttt 4573478  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| ||||| |||||||||||||||||||||    
T  4573479 ggactgaggcactatcccctcaccctaaaatttt 4573512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 14498182 - 14498078
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaa 14498083  T
Q  204 atttt 208  Q
    |||||    
T  14498082 atttt 14498078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 33763373 - 33763254
Alignment:
Q  88 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 187  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||| ||||||||| |    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatc 33763274  T
Q  188 atcccctcaccctaaaattt 207  Q
    ||||||||||||||||||||    
T  33763273 atcccctcaccctaaaattt 33763254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 33762646 - 33762539
Alignment:
Q  101 ctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 200  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  33762646 ctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccct 33762547  T
Q  201 aaaatttt 208  Q
    ||||||||    
T  33762546 aaaatttt 33762539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  119 ggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 198  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 44438670 - 44438553
Alignment:
Q  87 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 186  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |   |||||||||||||||||||| ||||||| ||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtac 44438571  T
Q  187 catcccctcaccctaaaa 204  Q
    ||||||||| || |||||    
T  44438570 catcccctcgccttaaaa 44438553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 35618034 - 35618104
Alignment:
Q  134 ctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 204  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 17015192 - 17015252
Alignment:
Q  147 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaattt 17015252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 15034455 - 15034501
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggt 121  Q
    |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  15034455 ccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 17291897 - 17291828
Alignment:
Q  133 cctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 203  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||| |||   ||||||| |||||||||    
T  17291897 cctttgtaaatgctctttgaaccagaaggtctt-cctgccttggactagggtgacatccccgcaccctaaa 17291828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 17064323 - 17064456
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  17064323 ccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgcctt 17064422  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  17064423 ggactggggcaccatcccctcaccctaaaatttt 17064456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 20983132 - 20983006
Alignment:
Q  78 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 177  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20983132 agagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttgga 20983033  T
Q  178 ctggggcaccatcccctcaccctaaaa 204  Q
    |||||||||||||||||||||||||||    
T  20983032 ctggggcaccatcccctcaccctaaaa 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 37976546 - 37976683
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaat----gtaattacctttgtaagtgctctttgagcccgaaggtcttccctg 170  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||    |||| |||||||||||||||| ||||||||||||||| || ||||    
T  37976546 ccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctg 37976645  T
Q  171 ccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37976646 ccttgaactggggcaccatcccctcaccctaaaatttt 37976683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 41910865 - 41910958
Alignment:
Q  116 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttta 209  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaatttta 41910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 31673863 - 31673956
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 202  Q
    |||||||| |||| |||||||| | |||||| |||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  31673863 ctttggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 5009531 - 5009416
Alignment:
Q  92 cgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcc 191  Q
    ||||||||| ||||| |||||||| ||| ||||||||| ||  ||||||| || |||||||  ||||||||||||| ||||||| ||||| ||| |||||    
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcc 5009432  T
Q  192 cctcaccctaaaatttt 208  Q
    || ||||||||||||||    
T  5009431 cc-caccctaaaatttt 5009416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 39162977 - 39162859
Alignment:
Q  85 ccgggttcgagccccgctagtgcctttggaggg---aggtaaatgtaattacctt-tgtaagtgctctttgagcccgaaggtcttccctgccttggactg 180  Q
    ||||||||||||||  |||||||| |||||||    |||||||||||| |||||| ||||| |||||||||||||    |||||||  ||||||||||||    
T  39162977 ccgggttcgagcccaactagtgcccttggaggaggaaggtaaatgtaaataccttgtgtaaatgctctttgagcc----ggtcttctgtgccttggactg 39162882  T
Q  181 gggcaccatcccctcaccctaaa 203  Q
    ||||||| |||| ||||||||||    
T  39162881 gggcaccgtcccatcaccctaaa 39162859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 35237102 - 35237059
Alignment:
Q  164 ttccctgccttggactggggcaccatcccctcaccctaaaattt 207  Q
    ||||||||||||||||| |||||||||||||||| |||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcactctaaaattt 35237059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 35237154 - 35237103
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 127  Q
    |||||||| | || ||||||||||||||||| ||||| ||||||||||||||    
T  35237154 cgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 38255614 - 38255559
Alignment:
Q  151 gagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 206  Q
    |||||| ||||||||||||   |||||||||||||||||| ||||||| |||||||    
T  38255614 gagcccaaaggtcttccctattttggactggggcaccatctcctcaccttaaaatt 38255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 18303409 - 18303352
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 165  Q
    ||||||||| | ||||| |||| ||| |||||||||||||||| | ||||||||||||    
T  18303409 ctttggaggaaagtaaacgtaaatacttttgtaagtgctctttaaacccgaaggtctt 18303352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 32326563 - 32326671
Alignment:
Q  96 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaa-ggtcttccctgccttggactggggcaccatcccct 194  Q
    |||| |||||||| ||||||||| |||||  ||| | ||||||||| |||||||| || ||| | ||| ||| ||||||||||| | | ||||||||||     
T  32326563 cccctctagtgccattggagggaagtaaaaataaattcctttgtaactgctcttttagtccgcacggtgttctctgccttggacagagtcaccatcccca 32326662  T
Q  195 caccctaaa 203  Q
    | |||||||    
T  32326663 cgccctaaa 32326671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 35163882 - 35163749
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35163882 ccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35163783  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  35163782 ggactggggcaccatcccctcaccctaaaatttt 35163749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 20685346 - 20685458
Alignment:
Q  96 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20685346 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttc 20685445  T
Q  196 accctaaaatttt 208  Q
    |||||||||||||    
T  20685446 accctaaaatttt 20685458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 19686957 - 19686827
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |    
T  19686957 gagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttag 19686858  T
Q  177 actggggcaccatcccctcaccctaaaattt 207  Q
    ||||||||| |||||||||||||||||||||    
T  19686857 actggggcatcatcccctcaccctaaaattt 19686827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 17948702 - 17948813
Alignment:
Q  97 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 196  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  17948702 cccgctagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctca 17948801  T
Q  197 ccctaaaatttt 208  Q
    || |||||||||    
T  17948802 ccttaaaatttt 17948813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 2711866 - 2711739
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||| |||||| || |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2711866 ccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgcctt 2711767  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||      |||||||||||||||||||||||||    
T  2711766 gga------caccatcccctcaccctaaaatttt 2711739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 15070152 - 15070254
Alignment:
Q  102 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 201  Q
    |||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  15070152 tagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcacccaa 15070251  T
Q  202 aaa 204  Q
    |||    
T  15070252 aaa 15070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 14505655 - 14505524
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||| ||||  |||||||||||||||||| |||||||||||||||||||||| |||||||||| |  |||||| || ||||| |||||| ||||||    
T  14505655 ccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaat-acctttgtaaatattctttgggcgcgaagatcttccgtgcctt 14505557  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||||| |||||||||||    
T  14505556 ggactggggcaccatcccctca-cctaaaatttt 14505524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 14496352 - 14496406
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 129  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14496352 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 24336640 - 24336718
Alignment:
Q  100 gctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggac 178  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||    
T  24336640 gctagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 46494530 - 46494401
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46494530 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctacctt 46494431  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  46494430 ggactggggcaccatcccctcaccctaaaa 46494401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 51066493 - 51066622
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51066493 ccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 51066592  T
Q  175 ggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||||||||||||||||||    
T  51066593 ggactggggcaccatcccctcaccctaaaa 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 36192542 - 36192673
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  36192542 cgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttg 36192641  T
Q  176 gactggggcaccatcccctcaccctaaaattt 207  Q
    ||||||||||||||||||||||||||||||||    
T  36192642 gactggggcaccatcccctcaccctaaaattt 36192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 51714097 - 51713964
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  51714097 ccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgcttt 51713998  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    | ||||||||||||||||||||||||||||||||    
T  51713997 gaactggggcaccatcccctcaccctaaaatttt 51713964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 7173717 - 7173584
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||  ||||| || |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||    
T  7173717 ccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgtt 7173618  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||    
T  7173617 ggactggggcaccatcccctcaccctaaaatttt 7173584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 30970516 - 30970383
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| ||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  30970516 ccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctacctt 30970417  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
     |||||||||||||||||||||||||||||||||    
T  30970416 agactggggcaccatcccctcaccctaaaatttt 30970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 32139164 - 32139297
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||    
T  32139164 ccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgcctt 32139263  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||| |||||||||| ||||    
T  32139264 ggactggggcaccatcccttcaccctaaattttt 32139297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 39863910 - 39863777
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  39863910 ccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctacctt 39863811  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||| | ||| |||||||||||||||||||||    
T  39863810 ggactgagacactatcccctcaccctaaaatttt 39863777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 50905748 - 50905881
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||    
T  50905748 ccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgcctt 50905847  T
Q  175 ggactggggcaccatcccctcaccctaaaatttt 208  Q
    | |||||||||||||||  |||||||||||||||    
T  50905848 gaactggggcaccatcctttcaccctaaaatttt 50905881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 8740448 - 8740550
Alignment:
Q  75 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  8740448 ccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgcctt 8740547  T
Q  175 gga 177  Q
    |||    
T  8740548 gga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 29576444 - 29576548
Alignment:
Q  104 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 203  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  204 atttt 208  Q
    |||||    
T  29576544 atttt 29576548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 55231715 - 55231820
Alignment:
Q  103 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 202  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaa 55231814  T
Q  203 aatttt 208  Q
    ||||||    
T  55231815 aatttt 55231820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 2570216 - 2570334
Alignment:
Q  90 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 189  Q
    ||||||| ||||| |||||||||||||||||||||| ||| || | || ||| || |||||||| |||||| ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  190 cccctcaccctaaaatttt 208  Q
    |||||||||||||||||||    
T  2570316 cccctcaccctaaaatttt 2570334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 47627127 - 47626992
Alignment:
Q  75 ccgagagaacccgggttcgag--ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcc 172  Q
    |||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||| ||||| | ||| | |||||||| | |||||||||||||||||    
T  47627127 ccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgcc 47627028  T
Q  173 ttggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||  ||||||| |||||||||||||||||    
T  47627027 ttggactggaacaccatctcctcaccctaaaatttt 47626992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 22304167 - 22304090
Alignment:
Q  131 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaatttt 22304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 676766 - 676861
Alignment:
Q  113 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| |||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaatttt 676861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 2294841 - 2294719
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    ||||||||| ||||||||||   |||||||||||||||||| ||||||||||||||||      ||||| || ||||||||||| |||||| |||||||     
T  2294841 cgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgcctta 2294748  T
Q  176 gactggggcaccatcccctcaccctaaaa 204  Q
    |||||||||||||||||||||||||||||    
T  2294747 gactggggcaccatcccctcaccctaaaa 2294719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 41523423 - 41523526
Alignment:
Q  101 ctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 200  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||  |||||| |||| ||||||||| ||| |||    
T  41523423 ctagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatcct 41523522  T
Q  201 aaaa 204  Q
    ||||    
T  41523523 aaaa 41523526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 51279154 - 51279035
Alignment:
Q  86 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 185  Q
    |||||| ||||||  ||| ||| ||| ||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||  ||||||| |  ||||    
T  51279154 cgggtttgagccctactaatgcttttagagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggca 51279055  T
Q  186 ccatcccctcaccctaaaat 205  Q
    ||||||||||||||||||||    
T  51279054 ccatcccctcaccctaaaat 51279035  T

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Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 50399763 - 50399646
Alignment:
Q  86 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 185  Q
    ||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||||||||  || |||||| || |||||||   |||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttggataagggca 50399664  T
Q  186 ccatcccctcaccctaaa 203  Q
     ||||| |||||||||||    
T  50399663 tcatccgctcaccctaaa 50399646  T

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Target: chr4; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 4080651 - 4080551
Alignment:
Q  108 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 207  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| | ||| |||||| ||| |||||| ||| ||||||||||||| || ||||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T
Q  208 t 208  Q
    |    
T  4080551 t 4080551  T

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Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 22423378 - 22423479
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    |||||| | ||| ||||||||| | |||| ||||||||||||||||||||||| ||| |||||||||| |||||| |  |||||||||||||||| ||||    
T  22423378 gagagatctcggattcgagcccggttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgctttgg 22423477  T
Q  177 ac 178  Q
    ||    
T  22423478 ac 22423479  T

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Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 7141724 - 7141772
Alignment:
Q  229 cttatatagttgtggtggattggaataaaatcggactcagttattcgcg 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7141724 cttatatagttgtggtggattggaataaaaccggactcagttattcgcg 7141772  T

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Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 23084530 - 23084468
Alignment:
Q  142 gtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 204  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| |||||| |||||||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaa 23084468  T

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Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 37990663 - 37990599
Alignment:
Q  139 taagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 203  Q
    ||||| ||||||||||| |||| |||||||| ||||||||||||||||||| |||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctcatcctaaa 37990599  T

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Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 51066240 - 51066283
Alignment:
Q  161 gtcttccctgccttggactggggcaccatcccctcaccctaaaa 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaa 51066283  T

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Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 40012548 - 40012645
Alignment:
Q  110 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 208  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||| |  |||||||||||| | ||||||| || |||| ||| ||||| ||||| ||||    
T  40012548 ttggagggaggtaaatgtaaatccctttgtgagtgctc-ttgagtcataaggtcttccctacgttggactaggacaccgtcctctcacactaaattttt 40012645  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 28202643 - 28202598
Alignment:
Q  154 cccgaaggtcttccctgccttggactggggcaccatcccctcaccc 199  Q
    |||||||||||| |||| ||| |||||| |||||||||||||||||    
T  28202643 cccgaaggtctttcctgtcttagactggagcaccatcccctcaccc 28202598  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 28202701 - 28202782
Alignment:
Q  120 gtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 201  Q
    |||||||||| | | |||||||||| ||| |||||| |||| |||||| ||||||  | ||  |||||||||||||||||||    
T  28202701 gtaaatgtaaatgcatttgtaagtgttctatgagcctgaagatcttccttgcctttaattgatgcaccatcccctcacccta 28202782  T

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Target: scaffold0021 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 107822 - 107691
Alignment:
Q  76 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 175  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  107822 cgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttg 107723  T
Q  176 gactggggcaccatcccctcaccctaaaatttt 208  Q
    ||||||||||||||||||||| |||||||||||    
T  107722 gactggggcaccatcccctca-cctaaaatttt 107691  T

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Target: scaffold0691 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 7099 - 6994
Alignment:
Q  77 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 176  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttgg 7000  T
Q  177 actggg 182  Q
    ||||||    
T  6999 actggg 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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