View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_19 (Length: 235)
Name: NF13112_low_19
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39153658 - 39153437
Alignment:
| Q |
1 |
cttttcaatttattttccaagactttggaaagcaatttattgagaacattacacaaagaaattgagtgtcaatccctcgcagtcatttgtacatcaccat |
100 |
Q |
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| T |
39153658 |
ctttttaatctattttccaagactttggaaagcaatttattgagaacattacacaaagaaattgagtgtcaatccctcgcagtcttttgtacatcaccat |
39153559 |
T |
|
| Q |
101 |
tagaaataaaagtcaatatttgtcatgttgagcatgggaaatgacctttcttaagccaagagctgcatttgcttcccaaaaaacatcatcattttcata- |
199 |
Q |
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| T |
39153558 |
tcgaaataaaagtcaatatttgtcatgttgagcatgggaaatgacctttcttaagccaagagctgcatttgcttcccaaaaaacatcatgattttcatag |
39153459 |
T |
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| Q |
200 |
attccaaaagtgatgataaagt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
39153458 |
attccaaaagtgatgataaagt |
39153437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 24332470 - 24332690
Alignment:
| Q |
1 |
cttttcaatttattttccaagactttggaaagcaatttattgagaacattacacaaagaaattgagtgtcaatccctcgcagtcatttgtacatcaccat |
100 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24332470 |
ctttttaatctattttccaagactttggaaagcaatttattgagaacattacacaaagaaattgagtgtcaatccctcgcagtcttttgtacatcaccat |
24332569 |
T |
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| Q |
101 |
tagaaataaaagtcaatatttgtcatgttgagcatgggaaatgacctttcttaagccaagagctgcatttgcttccc-aaaaaacatcatcattttcata |
199 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
24332570 |
tcgaaataaaagtcaatatttgtcatgttgagcatgggaaatgacctttcttaagccaagagctgcatttgcttcccaaaaaaacatcatgattttcata |
24332669 |
T |
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| Q |
200 |
-attccaaaagtgatgataaa |
219 |
Q |
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|||||||||||||||||||| |
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| T |
24332670 |
gattccaaaagtgatgataaa |
24332690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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