View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13112_low_2 (Length: 602)

Name: NF13112_low_2
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13112_low_2
NF13112_low_2
[»] chr3 (4 HSPs)
chr3 (154-585)||(18161265-18161699)
chr3 (10-136)||(18160975-18161104)
chr3 (465-520)||(19412122-19412177)
chr3 (41-101)||(19407206-19407263)
[»] chr1 (1 HSPs)
chr1 (181-416)||(33899020-33899260)
[»] chr8 (10 HSPs)
chr8 (264-420)||(19409112-19409267)
chr8 (264-420)||(19456131-19456286)
chr8 (181-383)||(19459358-19459565)
chr8 (264-420)||(19524791-19524946)
chr8 (181-383)||(19557036-19557243)
chr8 (264-420)||(19471082-19471235)
chr8 (264-420)||(19542006-19542159)
chr8 (264-420)||(19590538-19590691)
chr8 (227-420)||(19403193-19403373)
chr8 (246-352)||(5831587-5831695)
[»] chr6 (3 HSPs)
chr6 (250-376)||(6796471-6796598)
chr6 (256-416)||(7441159-7441318)
chr6 (277-305)||(33823151-33823179)
[»] scaffold0653 (1 HSPs)
scaffold0653 (275-305)||(964-994)
[»] chr7 (2 HSPs)
chr7 (275-305)||(9287323-9287353)
chr7 (275-305)||(9297115-9297145)
[»] chr4 (1 HSPs)
chr4 (275-305)||(35752692-35752722)


Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 154 - 585
Target Start/End: Original strand, 18161265 - 18161699
Alignment:
Q  154 ccttagggtgctttcttgataaagaataagaagagaaataatctatgagggagaccacatggtagaatgacaccgttccaatccatttaaagatcaaata 253  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18161265 ccttagggtgcttttttgataaagaataagaagagaaataatctaggagagagaccacatggtagaatgacaccattccaatccatttaaagatcaaata 18161364  T
Q  254 ccaaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaac 353  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18161365 ccaaatttccgctaccaagttacatcgacaaaacaagtgatcctccacctctcgtttcctcggacaccacacacaatccgatctaacaccatccactaac 18161464  T
Q  354 actcctcttctagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaatttattatagtatggttgtaagcaaaccgacacttt 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  18161465 actcctcttctagataaatttgagcaagtcgggagtttaccaggaattacttgccaagagaaaatttattatcgtatggttgtaagcaaaccgacacttt 18161564  T
Q  454 tccttaccaaggaggaaagggtccaaatgtcaaactatagttaatactttaaatacctttcattctcattctcattgaattgtgattgtgatgggtagct 553  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18161565 tccttaccaatgaggaaagggtccaactgtcaaactatagttaatactttaaatacctttcattctcattctcattgaattgtgattgtgatgggtagct 18161664  T
Q  554 accttgaatggac---tatggttgttagttgttac 585  Q
    |||||||||||||   |||||||||||||||||||    
T  18161665 accttgaatggactattatggttgttagttgttac 18161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 18160975 - 18161104
Alignment:
Q  10 attattctctaccttatgtactgaatgaaagga--aagaatgaattaagcagaatataatgtagctaga-agagttgactccactgacagtgtattttat 106  Q
    |||||| |||||||||||||| |||||||||||  || ||||||||||||||||||||||| |  |||  || |||||||||||||||||||||||||||    
T  18160975 attattttctaccttatgtacagaatgaaaggagaaataatgaattaagcagaatataatgaatgtagccagggttgactccactgacagtgtattttat 18161074  T
Q  107 tgtgtttctgattcttaaattcctgcatta 136  Q
    ||  ||||||||||||||||||||||||||    
T  18161075 tgcatttctgattcttaaattcctgcatta 18161104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 520
Target Start/End: Original strand, 19412122 - 19412177
Alignment:
Q  465 gaggaaagggtccaaatgtcaaactatagttaatactttaaatacctttcattctc 520  Q
    ||||||||||||||||||| | || ||||| |||||||||||||| ||||||||||    
T  19412122 gaggaaagggtccaaatgttagacgatagtgaatactttaaatacttttcattctc 19412177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 19407206 - 19407263
Alignment:
Q  41 gaaagaatgaattaagcagaatataatgtagctagaagagttgactccactgacagtgtat 101  Q
    |||| |||||||||||||||||||||||| ||    |||||||||||||| ||||||||||    
T  19407206 gaaataatgaattaagcagaatataatgttgc---cagagttgactccacggacagtgtat 19407263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 181 - 416
Target Start/End: Original strand, 33899020 - 33899260
Alignment:
Q  181 aagaagagaaataatctatgagggagaccacat-----ggtagaatgacaccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtta 275  Q
    ||||||| |||| ||||| |||||| |||||||     ||||||||||| ||||| ||||||||||||| ||| |||| || ||||||||||| ||||||    
T  33899020 aagaagataaatgatctaggagggaaaccacattttagggtagaatgaccccgttacaatccatttaaaaatcgaatatcatatttccgcaacaaagtta 33899119  T
Q  276 catctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttctagataaatttg 375  Q
    ||||| |||||||||||||| |  |||||| |  |||||| |||||||||||||||| | ||||| |||| |||||||||||||||| |||||| |||||    
T  33899120 catctgcaaaacaagtgatcatttacctcttgaatcctcaaacaccacacacaatccaaactaactccattcactaacactcctcttttagatacatttg 33899219  T
Q  376 agcaagtcgggagtttaccaggaattacttggcaagagaaa 416  Q
    ||| | || ||||| ||||| |||||||||| |||||||||    
T  33899220 agcgaatccggagtctaccaagaattacttgccaagagaaa 33899260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 19409267 - 19409112
Alignment:
Q  264 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttc 363  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||  ||||||||||| | || ||  ||||||||||||||||||||||||||     
T  19409267 gcaacgaagttacttctacaaaacaagtgatccttcacctctcgaatcctaggacaccacacagagtctgaaataacaccatccactaacactcctcttt 19409168  T
Q  364 tagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
     ||||||||||||||||||||||||| || ||  ||||||| |||||||||||||||    
T  19409167 cagataaatttgagcaagtcgggagtcta-caaaaattactaggcaagagaaaattt 19409112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 19456286 - 19456131
Alignment:
Q  264 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttc 363  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||  ||||||||||| | || ||  ||||||||||||||||||||||||||     
T  19456286 gcaacgaagttacttctacaaaacaagtgatccttcacctctcgaatcctaggacaccacacagagtctgaaataacaccatccactaacactcctcttt 19456187  T
Q  364 tagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
     ||||||||||||||||||||||||| || ||  ||||||| |||||||||||||||    
T  19456186 cagataaatttgagcaagtcgggagtcta-caaaaattactaggcaagagaaaattt 19456131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 181 - 383
Target Start/End: Original strand, 19459358 - 19459565
Alignment:
Q  181 aagaagagaaataatctatgagggagaccacat-----ggtagaatga-caccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtt 274  Q
    |||||||||||||||||| |||||| || |||      |||||||||| | ||||||| ||||||||||| ||  |||| ||||| || |||   |||||    
T  19459358 aagaagagaaataatctaggagggaaacaacacttctaggtagaatgatctccgttccgatccatttaaaaattgaatatcaaatgtctgcagtgaagtt 19459457  T
Q  275 acatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttctagataaattt 374  Q
    |||||||||||| ||| ||||||||||||||||  ||||  |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||    
T  19459458 acatctacaaaataagcgatcctccacctctcgaatccttggacaccacccacaatccgaactaacaccatccactaacactcctcttatagataaa-tt 19459556  T
Q  375 gagcaagtc 383  Q
    |||||||||    
T  19459557 gagcaagtc 19459565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 264 - 420
Target Start/End: Original strand, 19524791 - 19524946
Alignment:
Q  264 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttc 363  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||  ||||||||||| | || ||  ||||||||||||||||||||||||||     
T  19524791 gcaacgaagttacttctacaaaacaagtgatccttcacctctcgaatcctaggacaccacacagagtctgaaataacaccatccactaacactcctcttt 19524890  T
Q  364 tagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
     ||||||||||||||||||||||||| || ||  ||||||| |||||||||||||||    
T  19524891 cagataaatttgagcaagtcgggagtcta-caaaaattactaggcaagagaaaattt 19524946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 181 - 383
Target Start/End: Original strand, 19557036 - 19557243
Alignment:
Q  181 aagaagagaaataatctatgagggagaccacat-----ggtagaatga-caccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtt 274  Q
    |||||||||||||||||| |||||| || |||      |||||||||| | ||||||| ||||||||||| ||  |||| ||||| || |||   |||||    
T  19557036 aagaagagaaataatctaggagggaaacaacacttctaggtagaatgatctccgttccgatccatttaaaaattgaatatcaaatgtctgcagtgaagtt 19557135  T
Q  275 acatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttctagataaattt 374  Q
    |||||||||||| ||| ||||||||||||||||  ||||  |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||    
T  19557136 acatctacaaaataagcgatcctccacctctcgaatccttggacaccacccacaatccgaactaacaccatccactaacactcctcttatagataaa-tt 19557234  T
Q  375 gagcaagtc 383  Q
    |||||||||    
T  19557235 gagcaagtc 19557243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 264 - 420
Target Start/End: Original strand, 19471082 - 19471235
Alignment:
Q  264 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttc 363  Q
    ||||| ||||||| |||||||| ||||||||||| ||||||  |  ||||  |||||||||||||||| ||  ||||||||||||||||||||||||||     
T  19471082 gcaacgaagttacgtctacaaagcaagtgatccttcacctc--gaatcctaggacaccacacacaatctgaaataacaccatccactaacactcctcttt 19471179  T
Q  364 tagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
     ||||||||||||||||||||||| | || || |||||||| |||||||||||||||    
T  19471180 cagataaatttgagcaagtcgggaatcta-caagaattactaggcaagagaaaattt 19471235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 264 - 420
Target Start/End: Original strand, 19542006 - 19542159
Alignment:
Q  264 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttc 363  Q
    ||||| ||||||| |||||||| ||||||||||| ||||||  |  ||||  |||||||||||||||| ||  ||||||||||||||||||||||||||     
T  19542006 gcaacgaagttacgtctacaaagcaagtgatccttcacctc--gaatcctaggacaccacacacaatctgaaataacaccatccactaacactcctcttt 19542103  T
Q  364 tagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
     ||||||||||||||||||||||| | || || |||||||| |||||||||||||||    
T  19542104 cagataaatttgagcaagtcgggaatcta-caagaattactaggcaagagaaaattt 19542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 19590691 - 19590538
Alignment:
Q  264 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaacaccatccactaacactcctcttc 363  Q
    ||||| ||||||| |||||||| ||||||||||| ||||||  |  ||||  |||||||||||||||| ||  ||||||||||||||||||||||||||     
T  19590691 gcaacgaagttacgtctacaaagcaagtgatccttcacctc--gaatcctaggacaccacacacaatctgaaataacaccatccactaacactcctcttt 19590594  T
Q  364 tagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
     ||||||||||||||||||||||| | || || |||||||| |||||||||||||||    
T  19590593 cagataaatttgagcaagtcgggaatcta-caagaattactaggcaagagaaaattt 19590538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 227 - 420
Target Start/End: Complemental strand, 19403373 - 19403193
Alignment:
Q  227 cgttccaatccatttaaagatcaaataccaaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacaca 326  Q
    |||||| ||||||||||| ||| |||||||||| || ||||  |||||| |||||||||||||||||||||||| ||||||  | ||  |||||||||||    
T  19403373 cgttccgatccatttaaaaatcgaataccaaatgtctgcaatgaagtta-atctacaaaacaagtgatcctccagctctcgaattctaggacaccacaca 19403275  T
Q  327 caatccgatctaacaccatccactaacactcctcttctagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaaattt 420  Q
    || ||| | |||||||||           |||||||||||| ||||||||||||||||||||| || || |||||||| |||||||||||||||    
T  19403274 cattccaaactaacacca-----------tcctcttctagacaaatttgagcaagtcgggagtcta-caagaattactaggcaagagaaaattt 19403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 5831587 - 5831695
Alignment:
Q  246 atcaaataccaaatttccgcaaccaagttacatctacaaaacaagtgatcctc--cacctctcgtttcctcagacaccacacacaatccgatctaacacc 343  Q
    ||||||||| |||||||| |||| || ||| ||||||||||||||||||||||  ||||||| |  ||||||||||||||||||||| ||| ||||||||    
T  5831587 atcaaatactaaatttccacaacaaaattagatctacaaaacaagtgatcctccacacctcttgaatcctcagacaccacacacaattcgaactaacacc 5831686  T
Q  344 atccactaa 352  Q
    |||||||||    
T  5831687 atccactaa 5831695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 6796471 - 6796598
Alignment:
Q  250 aataccaaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcg-tttcctcagacaccacacacaatccgatctaacaccatcca 348  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  | || || |||||||||| ||||||| | ||||||| |||    
T  6796471 aataccaaatttccgcaacaaagttacatctacaaaacaagtgatcctccatctctcgaatcccccatacaccacacataatccgaacaaacaccaccca 6796570  T
Q  349 ctaacactcctcttctagataaatttga 376  Q
    |||| |||||||||||||||||||||||    
T  6796571 ctaaaactcctcttctagataaatttga 6796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 7441318 - 7441159
Alignment:
Q  256 aaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcg--tttcctcagacaccacacacaatccgatctaacaccatccactaac 353  Q
    ||||||||  ||| ||||||||||||||||||||||||| |||||||||| |  |||||    |||||||||| ||||| | | ||||| ||||||||||    
T  7441318 aaatttccataacaaagttacatctacaaaacaagtgattctccacctcttgaatttcca---acaccacacataatccaaacaaacactatccactaac 7441222  T
Q  354 actcctcttctagataaatttgagcaagtcgggagtttaccaggaattacttggcaagagaaa 416  Q
    |||| |||||||||||||||||||| ||| || ||| |||||  ||||||||  |||||||||    
T  7441221 actcatcttctagataaatttgagcgagtgggaagtctaccaaaaattacttaccaagagaaa 7441159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 305
Target Start/End: Original strand, 33823151 - 33823179
Alignment:
Q  277 atctacaaaacaagtgatcctccacctct 305  Q
    |||||||||||||||||||||||||||||    
T  33823151 atctacaaaacaagtgatcctccacctct 33823179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 994 - 964
Alignment:
Q  275 acatctacaaaacaagtgatcctccacctct 305  Q
    |||||||||||||||||||||||||||||||    
T  994 acatctacaaaacaagtgatcctccacctct 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 9287323 - 9287353
Alignment:
Q  275 acatctacaaaacaagtgatcctccacctct 305  Q
    |||||||||||||||||||||||||||||||    
T  9287323 acatctacaaaacaagtgatcctccacctct 9287353  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 9297115 - 9297145
Alignment:
Q  275 acatctacaaaacaagtgatcctccacctct 305  Q
    |||||||||||||||||||||||||||||||    
T  9297115 acatctacaaaacaagtgatcctccacctct 9297145  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 35752692 - 35752722
Alignment:
Q  275 acatctacaaaacaagtgatcctccacctct 305  Q
    |||||||||||||||||||||||||||||||    
T  35752692 acatctacaaaacaagtgatcctccacctct 35752722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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