View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_21 (Length: 221)
Name: NF13112_low_21
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 32046495 - 32046292
Alignment:
| Q |
18 |
atatttaggaatagttgtcgttgtttggaaattgacccccaccaactaatagaagagagattgaaggtagccggattttgggatgcggtgaaactaaagg |
117 |
Q |
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| T |
32046495 |
atatttaggaatcgctgtcgttgtttggaaattgacccgcaccaactaatagaagagagattgaaggtagccgaattttgggatgcggtgaaactaaagg |
32046396 |
T |
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| Q |
118 |
tgtatgcttataattacaagaatggtactgtagtacaacgtcaatcagcgtctaatattgcgttattagaaagatggaggtcagagacacacatttcttt |
217 |
Q |
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| T |
32046395 |
tatatgcttataattacaagaatggtactgtagtacaacgtcaatcagcgtctaatattgcattattagaaagatggaggtcagagacacacatttcttt |
32046296 |
T |
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| Q |
218 |
ttcc |
221 |
Q |
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|||| |
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| T |
32046295 |
ttcc |
32046292 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 1442000 - 1441965
Alignment:
| Q |
114 |
aaggtgtatgcttataattacaagaatggtactgta |
149 |
Q |
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| T |
1442000 |
aaggtatatgcttataattacaagaatggtactgta |
1441965 |
T |
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