View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_3 (Length: 488)
Name: NF13112_low_3
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 24 - 470
Target Start/End: Complemental strand, 45548781 - 45548335
Alignment:
| Q |
24 |
gaaactagagaaaatttcgataccatcacaaacaccattgagaaacaatcaggttatgaagaaccagtggagacgcaaccaaaacaaaaaggttacacag |
123 |
Q |
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|||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548781 |
gaaattagagaaaattttgataccatcacaaacaccgttgagaaacaatcaggttatgaagaaccagtggagacgcaaccaaaacaaaaaggttacacag |
45548682 |
T |
|
| Q |
124 |
atgaaattgaaatctcgtctgcggaagaagctgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatgagaaagttgagcatca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548681 |
atgaaattgaaatctcgtctgcggaagaagctgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatgagaaagttgagcatca |
45548582 |
T |
|
| Q |
224 |
aaaaagtgagaatggaaataacgttggttattctcttactgagaaattagctccagtttatggaaaggttgcagaggtaggaagtgcagtgaaatccaaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548581 |
aaaaagtgagaatggaaataacgttggttattctcttactgagaaattagctccagtttatggaaaggttgcagaggtaggaagtgcagtgaaatccaaa |
45548482 |
T |
|
| Q |
324 |
gtatatggaactaatgacggaactgaaacaaaaaatggggacaaaggggtcactgtgaaggattacttggccgagaagctaaagcctagtgaagaagata |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548481 |
gtatatggaactaatgacggaactgaaacaaaaaatggggacaaaggggtcactgtgaaggattacttggccgagaagctaaagcctagtgaagaagata |
45548382 |
T |
|
| Q |
424 |
aggcactttctgaggtgatttcagaaactttgaataaaggaaaagaa |
470 |
Q |
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| T |
45548381 |
aggcactttctgaggtgatttcagaaactttgaataaaggaaaagaa |
45548335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 335 - 470
Target Start/End: Complemental strand, 45543148 - 45543013
Alignment:
| Q |
335 |
taatgacggaactgaaacaaaaaatggggacaaaggggtcactgtgaaggattacttggccgagaagctaaagcctagtgaagaagataaggcactttct |
434 |
Q |
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|||||| |||||||||||||||||||| |||||||||| |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
45543148 |
taatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatctggctgagaagctaaggcctagtgaagaagataaggcactttct |
45543049 |
T |
|
| Q |
435 |
gaggtgatttcagaaactttgaataaaggaaaagaa |
470 |
Q |
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|||||| |||||||| |||| ||||||| |||||| |
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| T |
45543048 |
gaggtggtttcagaagctttacataaagggaaagaa |
45543013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 454
Target Start/End: Complemental strand, 45530257 - 45530138
Alignment:
| Q |
335 |
taatgacggaactgaaacaaaaaatggggacaaaggggtcactgtgaaggattacttggccgagaagctaaagcctagtgaagaagataaggcactttct |
434 |
Q |
| |
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|||||| |||||||||||||||||| | || ||||||| |||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
45530257 |
taatgagggaactgaaacaaaaaatcgagataaaggggctactgtgaaagactatttggctgagaagctaaggcctagtgaagaagataaggcactttct |
45530158 |
T |
|
| Q |
435 |
gaggtgatttcagaaacttt |
454 |
Q |
| |
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||||||||| |||| |||| |
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| T |
45530157 |
taggtgattttagaagcttt |
45530138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 45543754 - 45543702
Alignment:
| Q |
155 |
tgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatg |
207 |
Q |
| |
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|||||||||||||||| ||||||||| ||| ||||||||||| | ||||||| |
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| T |
45543754 |
tgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatg |
45543702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 21846685 - 21846614
Alignment:
| Q |
24 |
gaaactagagaaaatttcgataccatcacaaacaccattgagaaacaatcaggttatgaagaaccagtggag |
95 |
Q |
| |
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|||||||||||||| ||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
21846685 |
gaaactagagaaaacttcaataccattacaaacaccgttgaaaaacaatcaggttatgaagaaccagtggag |
21846614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 19671274 - 19671315
Alignment:
| Q |
43 |
ataccatcacaaacaccattgagaaacaatcaggttatgaag |
84 |
Q |
| |
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|||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
19671274 |
ataccatcccaaccaccattgagaaacaaccaggttatgaag |
19671315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 36610320 - 36610400
Alignment:
| Q |
259 |
ttactgagaaattagctccagtttatggaa--aggttgcagaggtaggaagtgcagtgaaatccaaagtatatggaactaa |
337 |
Q |
| |
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||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
36610320 |
ttacttagaaattagctccagtttattacacaaggttgcaaaggtaggaagtgcagtgaaatccaaagtgtatagaactaa |
36610400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 36623543 - 36623592
Alignment:
| Q |
235 |
atggaaataacgttggttattctcttactgagaaattagctccagtttat |
284 |
Q |
| |
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||||||| ||| ||| ||| |||||||||||||||||||||||||||||| |
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| T |
36623543 |
atggaaagaactttgcttactctcttactgagaaattagctccagtttat |
36623592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 470
Target Start/End: Original strand, 7005774 - 7005875
Alignment:
| Q |
369 |
ggggtcactgtgaaggattacttggccgagaagctaaagcctagtgaagaagataaggcactttctgaggtgatttcagaaactttgaataaaggaaaag |
468 |
Q |
| |
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||||| ||||||||||| | ||||| ||| | |||| ||||||||||||||| || ||||| ||| |||||||||||||| |||| ||||||| |||| |
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| T |
7005774 |
ggggttactgtgaaggactgtttggctgagtaactaaggcctagtgaagaagacaatgcactctctaaggtgatttcagaagcttttcataaagggaaag |
7005873 |
T |
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| Q |
469 |
aa |
470 |
Q |
| |
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|| |
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|
| T |
7005874 |
aa |
7005875 |
T |
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