View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_4 (Length: 474)
Name: NF13112_low_4
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 40505279 - 40505716
Alignment:
| Q |
18 |
cagaaccatggcgagtcaacgtaattttagcaaaagttgcacattggagtggtgaaccaccgtgattttatcgatctaacggtctatgtaaacaaacact |
117 |
Q |
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| T |
40505279 |
cagaaccatggtgagtcaacgtaattttagcaaaagttgcacattggagtggtgaactaccgtgattttatcgatctaatggtctatgtaaacaaacact |
40505378 |
T |
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| Q |
118 |
aattattagcataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatagaacaggaatagaaacag |
216 |
Q |
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| T |
40505379 |
aattattagcataatgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatagaacaggaatagaaacag |
40505478 |
T |
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| Q |
217 |
gagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgttgattggtgcttgaagg |
316 |
Q |
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| T |
40505479 |
gagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgttgattggtgcttgaagg |
40505578 |
T |
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| Q |
317 |
gtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaacttaagatttgatctttctgttctcttgatag |
416 |
Q |
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| T |
40505579 |
gtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaacttaaggtttgatctttctgttctcttgatag |
40505678 |
T |
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| Q |
417 |
gatcaacctcttcagaaagtggaaaatctgaacgccta |
454 |
Q |
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| T |
40505679 |
gatcaacctcttcagaaagtggaaaatctgaacgccta |
40505716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 101 - 454
Target Start/End: Original strand, 22137854 - 22138207
Alignment:
| Q |
101 |
ctatgtaaacaaacactaattattagcataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatag |
199 |
Q |
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| T |
22137854 |
ctatgtaaacaaacactaattattagcata-tgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatag |
22137952 |
T |
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| Q |
200 |
aacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgt |
299 |
Q |
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| T |
22137953 |
aacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgt |
22138052 |
T |
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| Q |
300 |
tgattggtgcttgaagggtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaacttaagatttgatct |
399 |
Q |
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| T |
22138053 |
tgattggtgcttgaagggtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaacttaaggtttgatct |
22138152 |
T |
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| Q |
400 |
ttctgttctcttgataggatcaacctcttcagaaagtggaaaatctgaacgccta |
454 |
Q |
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| T |
22138153 |
ttctgttctcttgataggatcaacctcttcagaaagtggaaaatctgaacgccta |
22138207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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