View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13112_low_9 (Length: 399)
Name: NF13112_low_9
Description: NF13112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13112_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 3621741 - 3621369
Alignment:
| Q |
9 |
gcagagatgagacgagagagacccatagggtgggtcatacaaattcattaatttgatttgattgatcatactacaagctaattaattagatgggactcaa |
108 |
Q |
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| T |
3621741 |
gcagagatgagacgagagagacccaaagggtgggtcatacaaattcattaatttgatttgattgatcatactacaagctaattaattagatgggactcaa |
3621642 |
T |
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| Q |
109 |
aatgtgaaagtgtccactaaatgacatcttccaaatccataatttgattgtatggga-cgaaccatattcacgagcagcagctcatatatcaaagtattc |
207 |
Q |
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| T |
3621641 |
aatgtgaaagtgtccactaaatgacatctcccaaatccataatttgattgtatgggaacgaaccatattcacgagcagcagctcatatatcaaagtattc |
3621542 |
T |
|
| Q |
208 |
caccaacacgtacaacggcttcccattcaaacgttcacgaccctgtcacatatgtacgtacgtattcacatgaaccatttggctaaaacttatatacaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
3621541 |
caccaacacgtacaacggcttcccattcaaacgttcacgaccctgtcacatatgtacgtacgtattcacatgaatcatttggctaaaacttatataaaat |
3621442 |
T |
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| Q |
308 |
gtcacagaaacagtttttaatgtgctagacagcaacaaacaaagtcattttcattatacagaaatacaaaata |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3621441 |
gtcacagaaacagtttttaatgtgctagacagcaacaaacaaagtcattttcattaaacagaaatacaaaata |
3621369 |
T |
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