View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13113_high_5 (Length: 265)
Name: NF13113_high_5
Description: NF13113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13113_high_5 |
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| [»] scaffold0570 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 48539012 - 48538772
Alignment:
| Q |
9 |
agcataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacg |
108 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |
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| T |
48539012 |
agcataggtacgggagaatccatttctgtttggaacgaaccttggttaaaagatcctatttgtcttcagccaaccacagaagtacaggttatgtgggacg |
48538913 |
T |
|
| Q |
109 |
ctcttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctcca |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48538912 |
ctcttactgttgcttatttattcaagccaaatcagaaggtatgaaacaacaattttattcactatgtctttgatgatggaacatcaaaccaaattctaca |
48538813 |
T |
|
| Q |
209 |
gactcctcttctccttctgtccgaacggatacagctgtttg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
48538812 |
gactcctcttctccttctgtccgaacggatacagctgtttg |
48538772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 16937141 - 16936900
Alignment:
| Q |
9 |
agcataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacg |
108 |
Q |
| |
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|||||||| || ||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||| |||| ||| |||| ||| ||||||||| | |
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| T |
16937141 |
agcataggcacaggagaatccatttctgtttggaacaaaccttggttaaaaaatcctatatgccttcaaccaaatacagaagtgcaggctatgtgggatg |
16937042 |
T |
|
| Q |
109 |
ctcttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctcca |
208 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||| ||| || |||| || ||||| ||||||||| |||||| |||| ||| |||||||| || |
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| T |
16937041 |
ctcttacggttgctcatttattcaagccaaatcaaaaggcatggaatgacaatttcattcattatgtctttaatgatgaaacaacaagtcaaattctgca |
16936942 |
T |
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| Q |
209 |
gactcctcttc-tccttctgtccgaacggatacagctgtttg |
249 |
Q |
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||| ||||||| |||||| || || |||||||| ||| |||| |
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| T |
16936941 |
gacccctcttcttccttccgttcggacggatacggctatttg |
16936900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 25736419 - 25736508
Alignment:
| Q |
46 |
aaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacgctcttactgttgctcatttattcaagc |
135 |
Q |
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|||||||| ||||||| ||||||||||| |||| |||| |||| ||||||||||||| || ||||||||| |||||| ||||||| |
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| T |
25736419 |
aaccttggctaaaagaatctatttgcctttagcctgtcacagaagtgcaggttatgtgggatgcccttactgttaatcatttgttcaagc |
25736508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 51900535 - 51900483
Alignment:
| Q |
169 |
actatgtctttgatgatggaacatcaaaccaaattctccagactcctcttctc |
221 |
Q |
| |
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||||||| |||||||||| |||| ||| | ||||||| ||||||||||||||| |
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| T |
51900535 |
actatgtttttgatgatgaaacagcaagcaaaattctgcagactcctcttctc |
51900483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 48206376 - 48206592
Alignment:
| Q |
12 |
ataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacgctc |
111 |
Q |
| |
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||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||| || | || | ||||| | |||||||||||||| | |
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| T |
48206376 |
ataggtacgggagaaaccatctctgtttggaatgaaccttggttaaatgatcctatttgccttcaaccgatcatataagtacaagttatgtgggacgcgc |
48206475 |
T |
|
| Q |
112 |
ttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctccagac |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||||||| ||| | ||||||| ||||| |
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| T |
48206476 |
ttactgttgctcacttattcaagccaaatcaaaaggtatggaatgaaaactttattcactatgtatttgatgatggaacaacaagcaaaattctgcagac |
48206575 |
T |
|
| Q |
212 |
tcctcttctccttctgt |
228 |
Q |
| |
|
||||||||||||||||| |
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| T |
48206576 |
tcctcttctccttctgt |
48206592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 329056 - 329265
Alignment:
| Q |
12 |
ataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacgctc |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||| || |||| ||||| | |||||||||||||| | |
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| T |
329056 |
ataggtacgggagaaaccatttctgtttggaatgaaccttggttaaatgatcctatctgccttcaaccgttcacagaagtacaagttatgtgggacgcgc |
329155 |
T |
|
| Q |
112 |
ttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctccagac |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| || | ||||||||||||||||| |||||||||| |||| ||| | ||||||| ||||| |
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|
| T |
329156 |
ttactgttgctcacttattcaagccaaatcaaaaggtatggaatgaaaactttattcactatgtttttgatgatgaaacagcaagcaaaattctgcagac |
329255 |
T |
|
| Q |
212 |
tcctcttctc |
221 |
Q |
| |
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|||||||||| |
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| T |
329256 |
tcctcttctc |
329265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 14584703 - 14584923
Alignment:
| Q |
9 |
agcataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacg |
108 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||| | || || | |||| | ||||||||||| | |
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|
| T |
14584703 |
agcataggcacgggagaatccatttctgtttggaatgaaccttggctaaaagatcctatatgccttcaacaaaacatagaagtgcaagttatgtgggatg |
14584802 |
T |
|
| Q |
109 |
ctcttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctcca |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||| || |||| || ||||| |||||||||||||||| |||| ||| |||||||| || |
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|
| T |
14584803 |
ctcttaatgttgctcatttattcaagccaaatcaaaaggtatggaatgacaatttcattcattatgtctttgatgatgaaacaacaagtcaaattctgca |
14584902 |
T |
|
| Q |
209 |
gactcctcttc-tccttctgt |
228 |
Q |
| |
|
||| ||||||| ||||||||| |
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|
| T |
14584903 |
gacccctcttcttccttctgt |
14584923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 6138 - 5933
Alignment:
| Q |
12 |
ataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacgctc |
111 |
Q |
| |
|
||||||||||||||| ||| || |||||||| ||||||||||| | ||||||||||||||||| || | |||| ||||| | |||||||||||| | | |
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|
| T |
6138 |
ataggtacgggagaaaccatctcagtttggaatgaaccttggttgcacgatcctatttgccttcaaccgatcacagaagtacaagttatgtgggactcgc |
6039 |
T |
|
| Q |
112 |
ttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctccagac |
211 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||| || | ||||||||||||||| | ||||||||||||||| ||| | |||| || ||||| |
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|
| T |
6038 |
ttactgttgctcacttatttaagccaaatcaaaaggtatggaatgaaaactttattcactatatttttgatgatggaacagcaagcaaaatactgcagac |
5939 |
T |
|
| Q |
212 |
tcctct |
217 |
Q |
| |
|
|||||| |
|
|
| T |
5938 |
tcctct |
5933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 36482062 - 36481857
Alignment:
| Q |
12 |
ataggtacgggagaattcatttctgtttggaacgaaccttggttaaaagatcctatttgccttcagccaaccacaaaagtataggttatgtgggacgctc |
111 |
Q |
| |
|
||||||||||||||| ||| || |||||||| ||||||||||| | ||||||||||||||||| || | |||| ||||| | |||||||||||| | | |
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|
| T |
36482062 |
ataggtacgggagaaaccatctcagtttggaatgaaccttggttgcacgatcctatttgccttcaaccgatcacagaagtacaagttatgtgggacacgc |
36481963 |
T |
|
| Q |
112 |
ttactgttgctcatttattcaagccaaatcagaaggtatgaaacaacaactttattcactatgtctttgatgatggaacatcaaaccaaattctccagac |
211 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||| || | ||||||||||||||| | ||||||||||||||| ||| | |||| || ||||| |
|
|
| T |
36481962 |
ttactgttgctcacttatttaagccaaatcaaaaggtatggaatgaaaactttattcactatatttttgatgatggaacagcaagcaaaatactgcagac |
36481863 |
T |
|
| Q |
212 |
tcctct |
217 |
Q |
| |
|
|||||| |
|
|
| T |
36481862 |
tcctct |
36481857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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