View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13113_low_1 (Length: 480)
Name: NF13113_low_1
Description: NF13113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13113_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 23779707 - 23779380
Alignment:
| Q |
7 |
agcagcacagacaaacatgacccaagtcgacggcggcgcagaggtcaccggagactcagtagacaacgacccacgaatttgagaacagatcgaggggttg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
23779707 |
agcaacacagacaaacatgacccaagtcgacggcggcgcagaggtcaccggaaactcagtagacaacgtcctacgaatttgagaacagatcgaggggttg |
23779608 |
T |
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| Q |
107 |
tcgcagatccaaa-gttgtgcttatgaaacgagttgcggtggtcgcagatccaaaaagcatcaccgacgagagcatagacgacaccggctacccaacgga |
205 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |
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| T |
23779607 |
tcgcagatccaaaagttgtgcttatgaaacgagttgcggtggtcgcagatccaaaaagcatcaccgacgagagcacatacggcgccggctacccaacgga |
23779508 |
T |
|
| Q |
206 |
acaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacctgcgtgagactacatgatggaaaacgtgtttggattgcaggaggagaggtgagtg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
23779507 |
acaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacctgcgtgaggctacatgatgaaaaacgtgtttggattggaggaggagaggtgagtg |
23779408 |
T |
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| Q |
306 |
gttatggaggttgttggcggcggctagg |
333 |
Q |
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| T |
23779407 |
gttatggaggttgtcggtggcggctagg |
23779380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 147 - 463
Target Start/End: Original strand, 53592270 - 53592584
Alignment:
| Q |
147 |
gtcgcagatccaaaaagcatcaccgacgagagcatagacgacaccggctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcac |
246 |
Q |
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| T |
53592270 |
gtcgcagatccaaaaagcatcaccgacgagagcacagacggcgccggctacccaacagaacaaggagcgagggtggtgaagcggcgaggagcgcgttcac |
53592369 |
T |
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| Q |
247 |
cacctgcgtgagactacatgatggaaaacgtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagggtagcaggagaga |
346 |
Q |
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||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53592370 |
cacttgcgtcaggctacatgatggaaaatgtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagggtagcaggagaga |
53592469 |
T |
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| Q |
347 |
gaacatagcgatttcacctatctgtcccaaacccaactacttgaagagaacagcaatgcaagtaaggttgtatcgcgtgtttcctatatgcttccttcta |
446 |
Q |
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| T |
53592470 |
gaacatagcgatttcacctatctgtcccaaacccaactacttgaagagaacaacaatgcaagtaaggttgtatcgcgtgtttcctatatgcttccttc-- |
53592567 |
T |
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| Q |
447 |
aaagataatatcaaaca |
463 |
Q |
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|||||||| |||||||| |
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| T |
53592568 |
aaagataaaatcaaaca |
53592584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 53592166 - 53592283
Alignment:
| Q |
17 |
acaaacatgacccaagtcgacggcggcgcagaggtcaccggagactcagtag---------------acaacgacccacgaatttgagaacagatcgagg |
101 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
53592166 |
acaaacaggacccaagacgacggcggcgcagaggtcaccggagactcagtagctccgattaggagaaacaacgacccacatatttgagaacagatcgagg |
53592265 |
T |
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| Q |
102 |
ggttgtcgcagatccaaa |
119 |
Q |
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|||||||||||||||||| |
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| T |
53592266 |
ggttgtcgcagatccaaa |
53592283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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