View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13113_low_8 (Length: 258)

Name: NF13113_low_8
Description: NF13113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13113_low_8
NF13113_low_8
[»] chr3 (5 HSPs)
chr3 (74-247)||(50295498-50295671)
chr3 (167-242)||(42530739-42530813)
chr3 (157-253)||(46692046-46692141)
chr3 (131-180)||(42530734-42530783)
chr3 (103-147)||(2593544-2593588)
[»] chr7 (13 HSPs)
chr7 (122-238)||(11828572-11828688)
chr7 (137-253)||(21813823-21813939)
chr7 (132-242)||(46963810-46963919)
chr7 (167-243)||(15623189-15623264)
chr7 (167-243)||(15623096-15623171)
chr7 (103-198)||(11828581-11828676)
chr7 (93-179)||(21813810-21813896)
chr7 (167-253)||(44338474-44338559)
chr7 (171-242)||(44338386-44338456)
chr7 (136-242)||(44338260-44338364)
chr7 (103-180)||(46963840-46963917)
chr7 (126-180)||(44338280-44338334)
chr7 (130-180)||(44338376-44338426)
[»] chr5 (8 HSPs)
chr5 (133-253)||(9511777-9511897)
chr5 (76-201)||(9511751-9511876)
chr5 (133-253)||(11335372-11335490)
chr5 (83-198)||(11335396-11335509)
chr5 (167-247)||(24137049-24137127)
chr5 (167-242)||(24136894-24136969)
chr5 (195-243)||(24136984-24137032)
chr5 (107-162)||(24136896-24136951)
[»] chr4 (6 HSPs)
chr4 (103-253)||(54147652-54147801)
chr4 (132-242)||(16870622-16870731)
chr4 (153-231)||(42265415-42265492)
chr4 (103-180)||(16870624-16870701)
chr4 (200-242)||(54147873-54147915)
chr4 (107-175)||(42265431-42265498)
[»] chr2 (16 HSPs)
chr2 (107-253)||(38584084-38584234)
chr2 (103-253)||(1173470-1173619)
chr2 (98-212)||(1173572-1173686)
chr2 (103-212)||(1173541-1173650)
chr2 (87-201)||(38584105-38584219)
chr2 (126-232)||(38584136-38584246)
chr2 (167-253)||(1173284-1173369)
chr2 (132-236)||(8986184-8986287)
chr2 (133-232)||(1173583-1173682)
chr2 (167-248)||(1173382-1173462)
chr2 (103-181)||(32290562-32290644)
chr2 (87-153)||(32290581-32290647)
chr2 (103-180)||(8986186-8986263)
chr2 (107-136)||(1173308-1173337)
chr2 (130-212)||(32290558-32290644)
chr2 (168-201)||(32290651-32290684)
[»] chr1 (11 HSPs)
chr1 (169-242)||(15630034-15630107)
chr1 (134-235)||(2072366-2072466)
chr1 (134-235)||(2075896-2075996)
chr1 (122-193)||(19825094-19825165)
chr1 (153-227)||(19825091-19825165)
chr1 (137-198)||(15630047-15630108)
chr1 (106-162)||(15630052-15630108)
chr1 (124-182)||(2072388-2072446)
chr1 (87-174)||(19825082-19825165)
chr1 (167-242)||(15629942-15630016)
chr1 (124-182)||(2075918-2075976)
[»] chr8 (9 HSPs)
chr8 (167-253)||(20242151-20242236)
chr8 (171-242)||(20242063-20242133)
chr8 (171-242)||(20250934-20251004)
chr8 (136-242)||(20241937-20242041)
chr8 (136-242)||(20251026-20251130)
chr8 (126-180)||(20241957-20242011)
chr8 (130-180)||(20242053-20242103)
chr8 (130-180)||(20250964-20251014)
chr8 (126-180)||(20251056-20251110)
[»] chr6 (6 HSPs)
chr6 (133-242)||(13167363-13167470)
chr6 (167-243)||(21862244-21862319)
chr6 (167-244)||(21862147-21862223)
chr6 (115-175)||(13097915-13097975)
chr6 (167-253)||(28063530-28063615)
chr6 (200-241)||(28063633-28063674)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 74 - 247
Target Start/End: Original strand, 50295498 - 50295671
Alignment:
Q  74 gatgagttgagatagtgcacacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtt 173  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  50295498 gatgagttgagatagtgcacacaatttgattgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtt 50295597  T
Q  174 tggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctccccccttt 247  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50295598 tggtgagttgagttctcgtactttgattgtttggtgagttaagtactcataatttggtttcttctccccccttt 50295671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 42530739 - 42530813
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||    || ||||||||||||||||||||||||    
T  42530739 ggttgtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 42530813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 46692141 - 46692046
Alignment:
Q  157 ctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    |||||| || |||||||||||||||  | |||||||| || | |||||||||||||  ||| ||||||||||||||||||||| ||| |||| ||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcacatttag-ttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattct 46692046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 42530734 - 42530783
Alignment:
Q  131 aatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||||| |||||||||| ||||||| ||||||||| ||||||||||||||    
T  42530734 aatttggttgtttggtgagtcgagttctcacactttggttgtttggtgag 42530783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 2593588 - 2593544
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtg 147  Q
    ||||||||||  |||||| |||||||||||||||||| |||||||    
T  2593588 ttgtttgtttgatgagtcaagtgctcacaatttgtttctttggtg 2593544  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 11828688 - 11828572
Alignment:
Q  122 agtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactc 221  Q
    ||||||||||||||||| |||||||||||| |||||||||| || |||||| |||||||| | || |||||| |||| ||||||||||||||||||||||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactc 11828589  T
Q  222 acaatttggtttcttct 238  Q
    |||||||||||||||||    
T  11828588 acaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 21813823 - 21813939
Alignment:
Q  137 tttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttctt 236  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||| |||| |||||| |||| ||| |||||||  ||||||| ||||||||||||| ||    
T  21813823 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggtttttt 21813922  T
Q  237 ctcccccctttgcttct 253  Q
    ||||||| |||| ||||    
T  21813923 ctcccccttttgattct 21813939  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 46963919 - 46963810
Alignment:
Q  132 atttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggt 231  Q
    |||||||||||||||||||| ||  |||| | || | ||||||||||||| || ||||||||||||| ||||||||||||  | || |||||||||||||    
T  46963919 atttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggt 46963821  T
Q  232 ttcttctcccc 242  Q
    |||||||||||    
T  46963820 ttcttctcccc 46963810  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 15623264 - 15623189
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctccccc 243  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  15623264 ggttgtttggtgagtctagttctcaca-tttgattgtttggtgagttgagtgctcacaattttgtttcttctccccc 15623189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 15623171 - 15623096
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctccccc 243  Q
    |||||||||||||||  |||||||||| |||| |||||||||||||| ||| |||||||||| ||||||||||||||    
T  15623171 ggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttcttctccccc 15623096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 11828676 - 11828581
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttg 198  Q
    ||||| |||| ||| ||| ||||||||||||||| |||| ||||| |||| ||||||||| || |||||||||||||||| ||| |||||| ||||    
T  11828676 ttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttg 11828581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 21813810 - 21813896
Alignment:
Q  93 cacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtga 179  Q
    ||||||| | || ||||||| ||||||| |||||||||| |||| |||||||||| |||||||||||||| || ||||| |||||||    
T  21813810 cacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtga 21813896  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 44338474 - 44338559
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    ||||||||||||||| ||||||||||| |||| |||| ||||||||   || ||||||||||||||||||||||||| |||| ||||    
T  44338474 ggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattct 44338559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 44338386 - 44338456
Alignment:
Q  171 gtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    ||||||||||| |||||||||||||||| ||||||||||||    || ||||||||||||||||||||||||    
T  44338386 gtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 44338456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 44338260 - 44338364
Alignment:
Q  136 gtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttct 235  Q
    |||||||||||||||| ||  |||| | || | ||||||||||||| ||||||||||| |||| ||||||||||||    || |||||||||||||||||    
T  44338260 gtttgtttggtgggtc-agcactcataatttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag-cgtgtgctcacaatttggtttct 44338357  T
Q  236 tctcccc 242  Q
    |||||||    
T  44338358 tctcccc 44338364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 46963917 - 46963840
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||||||||| ||| ||| ||  |||| |||||| |||||||||| ||||| | ||||||||| ||||||||||||||    
T  46963917 ttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag 46963840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 44338280 - 44338334
Alignment:
Q  126 ctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||| |||||| |||||||||| ||||||| |||||| || ||||||||||||||    
T  44338280 ctcataatttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag 44338334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 44338376 - 44338426
Alignment:
Q  130 caatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    ||||||| | |||||||| ||||||| ||||||||| ||||||||||||||    
T  44338376 caatttggtggtttggtgagtcgagttctcacactttggttgtttggtgag 44338426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 9511777 - 9511897
Alignment:
Q  133 tttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtt 232  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||||||||||| ||||||||||||| ||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatt 9511876  T
Q  233 tcttctcccccctttgcttct 253  Q
    |||| |||||| |||| ||||    
T  9511877 tcttatcccccttttgattct 9511897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 9511751 - 9511876
Alignment:
Q  76 tgagttgagatagtgcacacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttg 175  Q
    |||||| ||||||| | ||||||| | |||||||||| |||||||||||||||||| || | |||||||||| |||||||||||||| || |||||||||    
T  9511751 tgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttg 9511850  T
Q  176 gtgagttgagttctcacactttgatt 201  Q
    ||||||| | | |||||| |||||||    
T  9511851 gtgagttaaatactcacaatttgatt 9511876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 11335490 - 11335372
Alignment:
Q  133 tttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtt 232  Q
    ||||||||||||| ||||| |||||||||| || | |||||||||| |   ||| ||||||||||| |||||||||||||  | | ||||||||||||||    
T  11335490 tttgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggga--agtactcacactttggttgtttggtgagtcgaatgctcacaatttggtt 11335393  T
Q  233 tcttctcccccctttgcttct 253  Q
    ||||||||||| |||| ||||    
T  11335392 tcttctcccccttttgattct 11335372  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 11335509 - 11335396
Alignment:
Q  83 agatagtgcacacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagtt 182  Q
    ||||||||| ||||||| | |||||||||| | | ||| ||||||||||||||||||||||||||||   ||| ||||||||| |||||||||||||||     
T  11335509 agatagtgctcacaattggtttgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg--aagtactcacactttggttgtttggtgagtc 11335412  T
Q  183 gagttctcacactttg 198  Q
    || | |||||| ||||    
T  11335411 gaatgctcacaatttg 11335396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 24137049 - 24137127
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctccccccttt 247  Q
    |||||||||||||||  |||||||||| |||| |||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  24137049 ggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggttt-ttctccccccttt 24137127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 24136894 - 24136969
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    ||||||||||||||  || |||||||| |||| |||||||||||||  ||| |||||||||| |||||||| ||||    
T  24136894 ggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttcccccc 24136969  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 24136984 - 24137032
Alignment:
Q  195 tttgattgtttggtgagttaagtactcacaatttggtttcttctccccc 243  Q
    |||| |||||||||||||  ||| |||||||||||||||||||||||||    
T  24136984 tttggttgtttggtgagtctagttctcacaatttggtttcttctccccc 24137032  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 24136896 - 24136951
Alignment:
Q  107 ttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcaca 162  Q
    |||||| ||||| ||| | ||||||||||| |||||||||| ||||||||||||||    
T  24136896 ttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcaca 24136951  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 54147652 - 54147801
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattg 202  Q
    |||||||||| ||| ||| |||||||| ||||||||||||||||| |||  ||||||||||||  ||||||||||||||  |||||||||| |||| |||    
T  54147652 ttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttg 54147751  T
Q  203 tttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    |||||||||||  || |||||||||||||||||| |||||| |||| ||||    
T  54147752 tttggtgagtttggtgctcacaatttggtttctt-tcccccttttgattct 54147801  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 16870622 - 16870731
Alignment:
Q  132 atttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggt 231  Q
    |||||||||||||||||||| ||  |||| | || | ||||||||||||| || ||||||||||||| ||||||||||||  | || |||||||||||||    
T  16870622 atttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggt 16870720  T
Q  232 ttcttctcccc 242  Q
    |||||||||||    
T  16870721 ttcttctcccc 16870731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 42265415 - 42265492
Alignment:
Q  153 agtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggt 231  Q
    |||||||||  || ||||||||||||||| |||| |||||| |||| ||||||||||| | |||| |||||||||||||    
T  42265415 agtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 16870624 - 16870701
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||||||||| ||| ||| ||  |||| |||||| |||||||||| ||||| | ||||||||| ||||||||||||||    
T  16870624 ttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag 16870701  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 54147873 - 54147915
Alignment:
Q  200 ttgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  54147873 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccc 54147915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 42265431 - 42265498
Alignment:
Q  107 ttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttg 175  Q
    |||||| ||||||||||| ||||||||||| ||||||||||  || |||||||||| || ||| |||||    
T  42265431 ttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggtggtttg 42265498  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 38584234 - 38584084
Alignment:
Q  107 ttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggt----cgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattg 202  Q
    |||||| |||||||||||||||||| |||| ||||||||| |||    | |||||||||| || ||| |||||||||||| ||| |||||| |||| |||    
T  38584234 ttgtttggtgagtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttg 38584135  T
Q  203 tttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    ||||||||||||| | ||||||||||| ||| ||||||||| |||| ||||    
T  38584134 tttggtgagttaaatgctcacaatttgattttttctcccccttttgattct 38584084  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 253
Target Start/End: Complemental strand, 1173619 - 1173470
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattg 202  Q
    |||||||||| ||||||||||| |||| | |||| |||||||||| ||| ||||||||||  | | |||||||||||||  ||  ||||||||||| |||    
T  1173619 ttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagta-agcgctcacactttggttg 1173521  T
Q  203 tttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    ||||||||||  ||| ||||||||||||||||||||| ||| |||| ||||    
T  1173520 tttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattct 1173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 1173686 - 1173572
Alignment:
Q  98 tttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacacttt 197  Q
    |||| |||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| | || | ||||||||||||| |||| |||| | |||    
T  1173686 tttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatatttt 1173587  T
Q  198 gattgtttggtgagt 212  Q
    | |||||||||||||    
T  1173586 ggttgtttggtgagt 1173572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 1173650 - 1173541
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattg 202  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||| ||||||| |||| | || |||||||||||||||  ||| ||||||  ||| |||    
T  1173650 ttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttg 1173551  T
Q  203 tttggtgagt 212  Q
    ||||||||||    
T  1173550 tttggtgagt 1173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 38584219 - 38584105
Alignment:
Q  87 agtgcacacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagt 186  Q
    ||||| |||| |||||||||||| || ||||||| ||||||||||||||| | |||||||| ||  |||||||||| || |||||||||||||||| | |    
T  38584219 agtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagttaaat 38584120  T
Q  187 tctcacactttgatt 201  Q
     |||||| |||||||    
T  38584119 gctcacaatttgatt 38584105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 38584246 - 38584136
Alignment:
Q  126 ctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtt----tggtgagttgagttctcacactttgattgtttggtgagttaagtactc 221  Q
    ||||||||||| |||||||||| |||||||||||||| || |||||||    ||||||||  ||| |||||| |||| | |||||||||||||||| |||    
T  38584246 ctcacaatttgcttgtttggtgagtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctc 38584147  T
Q  222 acaatttggtt 232  Q
    |||||||||||    
T  38584146 acaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 1173369 - 1173284
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    |||||||||||||||  |||||||||| ||||||||||| ||||||  ||| ||||||||||||||||||||||||| |||| ||||    
T  1173369 ggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattct 1173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 8986184 - 8986287
Alignment:
Q  132 atttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggt 231  Q
    |||||||||||||||||||| ||  |||| | || | ||||||||||||| || ||||||||||||| ||||||||||||  | || |||||||||||||    
T  8986184 atttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggt 8986282  T
Q  232 ttctt 236  Q
    |||||    
T  8986283 ttctt 8986287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 1173682 - 1173583
Alignment:
Q  133 tttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtt 232  Q
    ||||||||||||||||||| |||||||| | || | |||||||||| || |||| |||| | |||| |||||||||||||  |||||||| | |||||||    
T  1173682 tttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggtt 1173583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 1173462 - 1173382
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccctttg 248  Q
    |||||||||||||||  | |||||||| |||| |||||||||||||  ||| | ||||||||||||||||||||||| ||||    
T  1173462 ggttgtttggtgagtctaattctcaca-tttggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttg 1173382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 32290562 - 32290644
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttg----tttgtttggtgggtcgagtgctcacacttgggttgtttggtgagt 181  Q
    |||||||||| ||| ||| |||||||||||||||    ||| ||||||||||| |||||||||| || |||||||||||||||    
T  32290562 ttgtttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagt 32290644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 32290581 - 32290647
Alignment:
Q  87 agtgcacacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcga 153  Q
    ||||| |||||||||||| ||| ||| ||| ||| ||||||||||||||| |||||||||| |||||    
T  32290581 agtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtcga 32290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 8986186 - 8986263
Alignment:
Q  103 ttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||||||||| ||| ||| ||  |||| |||||| |||||||||| ||||| | ||||||||| ||||||||||||||    
T  8986186 ttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag 8986263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 1173337 - 1173308
Alignment:
Q  107 ttgtttagtgagtcgagtgctcacaatttg 136  Q
    ||||||||||||||||||||||||||||||    
T  1173337 ttgtttagtgagtcgagtgctcacaatttg 1173308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 32290558 - 32290644
Alignment:
Q  130 caatttgtttgtttggtgggtcgagtgctcacacttggg----ttgtttggtgagttgagttctcacactttgattgtttggtgagt 212  Q
    |||||||||||||||||||||| |||||||||| || ||    || ||||||| ||  ||| |||||| |||| |||||||||||||    
T  32290558 caatttgtttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagt 32290644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 32290651 - 32290684
Alignment:
Q  168 gttgtttggtgagttgagttctcacactttgatt 201  Q
    |||||||||||||| |||||||||||||||||||    
T  32290651 gttgtttggtgagtcgagttctcacactttgatt 32290684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 15630107 - 15630034
Alignment:
Q  169 ttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccc 15630034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 2072466 - 2072366
Alignment:
Q  134 ttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggttt 233  Q
    ||||||| | ||||||| || |||||||| || | ||||||| ||||| |||| |||| |||||| ||||||||||||||| ||||||||||||||||||    
T  2072466 ttgtttggtgggtgggt-gattgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggttt 2072368  T
Q  234 ct 235  Q
    ||    
T  2072367 ct 2072366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 2075996 - 2075896
Alignment:
Q  134 ttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggttt 233  Q
    ||||||| | ||||||| || |||||||| || |||||||||  |||| |||| |||| |||||| ||||||||||||||| ||||||||||||||||||    
T  2075996 ttgtttggtgggtgggt-gattgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggttt 2075898  T
Q  234 ct 235  Q
    ||    
T  2075897 ct 2075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 19825165 - 19825094
Alignment:
Q  122 agtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcaca 193  Q
    ||||||||||||||| |||||||| | |||||||||||||| || |||||||||||||||| ||| ||||||    
T  19825165 agtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcaca 19825094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 19825165 - 19825091
Alignment:
Q  153 agtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatt 227  Q
    |||||||||| || |||||||||| |||| |||| |||||| |||| |||||||||||||||||| |||||||||    
T  19825165 agtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 15630108 - 15630047
Alignment:
Q  137 tttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttg 198  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||| ||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttg 15630047  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 15630108 - 15630052
Alignment:
Q  106 tttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcaca 162  Q
    ||||||| |||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcaca 15630052  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 2072446 - 2072388
Alignment:
Q  124 tgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagtt 182  Q
    ||||||||||||| ||||||| || |||||||||||| |||| ||||||||||||||||    
T  2072446 tgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagtt 2072388  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 19825165 - 19825082
Alignment:
Q  87 agtgcacacaatttggttgtttgtttagtgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgttt 174  Q
    ||||| |||||||||||||||||    | ||||||||||||||||||||| |||||||||| ||  |||||||||| |||| ||||||    
T  19825165 agtgctcacaatttggttgtttg----gcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaattggtttgttt 19825082  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 15630016 - 15629942
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    |||||||| ||||||  | |||||||| |||| |||||||||||||  ||| ||||||||||||||||||||||||    
T  15630016 ggttgtttagtgagtctaattctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccc 15629942  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 2075976 - 2075918
Alignment:
Q  124 tgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagtt 182  Q
    ||||||||||||| |||||||  | |||||||||||| |||| ||||||||||||||||    
T  2075976 tgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagtt 2075918  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 20242151 - 20242236
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    ||||||||||||||| ||||||||||| |||| |||| ||||||||   || ||||||||||||||||||||||||| |||| ||||    
T  20242151 ggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattct 20242236  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 20242063 - 20242133
Alignment:
Q  171 gtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    ||||||||||| |||||||||||||||| ||||||||||||    || ||||||||||||||||||||||||    
T  20242063 gtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 20242133  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 20251004 - 20250934
Alignment:
Q  171 gtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccc 242  Q
    ||||||||||| |||||||||||||||| ||||||||||||    || ||||||||||||||||||||||||    
T  20251004 gtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 20250934  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 20241937 - 20242041
Alignment:
Q  136 gtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttct 235  Q
    |||||||||||||||| ||  |||| | || | ||||||||||||| ||||||||||| |||| ||||||||||||    || |||||||||||||||||    
T  20241937 gtttgtttggtgggtc-agcactcataatttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag-cgtgtgctcacaatttggtttct 20242034  T
Q  236 tctcccc 242  Q
    |||||||    
T  20242035 tctcccc 20242041  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 20251130 - 20251026
Alignment:
Q  136 gtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttct 235  Q
    |||||||||||||||| ||  |||| | || | ||||||||||||| ||||||||||| |||| ||||||||||||    || |||||||||||||||||    
T  20251130 gtttgtttggtgggtc-agcactcataatttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag-cgtgtgctcacaatttggtttct 20251033  T
Q  236 tctcccc 242  Q
    |||||||    
T  20251032 tctcccc 20251026  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 20241957 - 20242011
Alignment:
Q  126 ctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||| |||||| |||||||||| ||||||| |||||| || ||||||||||||||    
T  20241957 ctcataatttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag 20242011  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 20242053 - 20242103
Alignment:
Q  130 caatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    ||||||| | |||||||| ||||||| ||||||||| ||||||||||||||    
T  20242053 caatttggtggtttggtgagtcgagttctcacactttggttgtttggtgag 20242103  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 20251014 - 20250964
Alignment:
Q  130 caatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    ||||||| | |||||||| ||||||| ||||||||| ||||||||||||||    
T  20251014 caatttggtggtttggtgagtcgagttctcacactttggttgtttggtgag 20250964  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 20251110 - 20251056
Alignment:
Q  126 ctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgag 180  Q
    |||| |||||| |||||||||| ||||||| |||||| || ||||||||||||||    
T  20251110 ctcataatttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag 20251056  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 13167363 - 13167470
Alignment:
Q  133 tttgtttgtttggtgggtcgagtgctcacacttgggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtt 232  Q
    ||||||||||||||||||| ||||||| || || | ||||||||||||| || ||||||||||||| ||||||| ||||   | | |||||||||||||     
T  13167363 tttgtttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtcgaattctcacactttg-ttgtttgctgagcgta-tgctcacaatttggtg 13167460  T
Q  233 tcttctcccc 242  Q
    ||||||||||    
T  13167461 tcttctcccc 13167470  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 21862244 - 21862319
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctccccc 243  Q
    |||||||||||||||  || ||||||| |||| |||||||||||||  ||| |||||||||||||||||||||||||    
T  21862244 ggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccc 21862319  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 21862147 - 21862223
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccc 244  Q
    |||||||||||||||  |||||||||| |||| |||||||||||||  ||| ||||  |||||||||| |||||||||    
T  21862147 ggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtttcctctcccccc 21862223  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 13097915 - 13097975
Alignment:
Q  115 tgagtcgagtgctcacaatttgtttgtttggtgggtcgagtgctcacacttgggttgtttg 175  Q
    |||||||||||||||||| ||||||||||| || | | |||||||||| || |||||||||    
T  13097915 tgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 28063615 - 28063530
Alignment:
Q  167 ggttgtttggtgagttgagttctcacactttgattgtttggtgagttaagtactcacaatttggtttcttctcccccctttgcttct 253  Q
    |||||||||||||||  |||||||||| |||| ||||||||| |||| | | ||| ||||||| ||||||| ||||| |||| ||||    
T  28063615 ggttgtttggtgagtctagttctcaca-tttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattct 28063530  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 28063674 - 28063633
Alignment:
Q  200 ttgtttggtgagttaagtactcacaatttggtttcttctccc 241  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  28063674 ttgtttggtgagtcaggtgctcacaatttggtttcttctccc 28063633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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