View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_1 (Length: 993)
Name: NF13114_high_1
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 841; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 1 - 976
Target Start/End: Original strand, 41709018 - 41709977
Alignment:
| Q |
1 |
cacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatccagttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709018 |
cacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatccagttttc |
41709117 |
T |
|
| Q |
101 |
ctcaaagttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaacacagtttaaagcagattattgttttcttcaatagttatgccc |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41709118 |
ctcaaagttaatttcttctg----------------tggagatagcttaaaatgcaacacaatttaaagcagattattgttttcttcaatagttatgccc |
41709201 |
T |
|
| Q |
201 |
catgtttcttataacacaggctgcaatgtgcttagaaattgagagtgtatagacactttaaggtggcttgtttattaagaaaaactgacaagtactacca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41709202 |
catgtttcttataacacaggctgcaatgtgcttagaaattgagagtgtatagacactttaaggtggcttgtgtattaagaaaaactgacaagtactacca |
41709301 |
T |
|
| Q |
301 |
ctattattaaacttagttcacttgtcaacattttgacagcacccatatcagtgtagaaaactggacccatttcgtgttcagtatagaaaactgaacgctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41709302 |
ctattattaaacttagttcacttgtcaacattttgacagcacccatattagtgtagaaaactggacccatatcgtgttcagtatagaaaactgaacgctt |
41709401 |
T |
|
| Q |
401 |
gtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcggttccgacaccaatataacgaatacaaaatttcactatagcaatgagtaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
41709402 |
gtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcagttccgacaccaatatatcgaatacaaaatttcactatagcaatgagtaga |
41709501 |
T |
|
| Q |
501 |
tctgctcagtggagtgggctaagattaggaactaatctataatatgatgatcgaattccatgattgtaagttcattccatttaggataacgatcaggcat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41709502 |
tctgctcagtggagtgggctaagattaggaactaatctataatttgatgatcgaattccatcattgtaagttcattccatttaggataacgatcgggcat |
41709601 |
T |
|
| Q |
601 |
ttgnnnnnnnacacatctcattatttaaaaccatatatcaccccttttatcataagctgaatcgataactaagtttaactgtccannnnnnngataaaat |
700 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41709602 |
ttggttttttacacatctcattatttaaaaccatatatcaccccttttatcataagctgaatcgataactaagtttaactgtccatttttttgataaaat |
41709701 |
T |
|
| Q |
701 |
gtatataagctatcaagtaatttcactgccattatcaagcttgatcaaatctgctatctttgactttgcgttgaatttcactctcaatgtctttaagaat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41709702 |
gtatataagctatcaagtaatttcactgccattatcaagcttgatcaaatctgctatctttgactttgcgttgaatttcactctcaatgtctttaagaat |
41709801 |
T |
|
| Q |
801 |
gtctaggacaccaagaatacccaaaagcactagtccacctgaaaaattaccaccaccgcctcctccattaccaccattgccatcatcgtcgcgaggtggc |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41709802 |
gtctaggacaccaagaatacccaaaagcactagtccacctgaaaaattaccaccaccgcctcctccattaccaccattgccatcatcgtcgcgaggtggc |
41709901 |
T |
|
| Q |
901 |
aatccaggcccattgtcatcaagtctaatctttttgtctgtcatttcaggaaaatgatagcaaattatatttgtat |
976 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
41709902 |
aatccaggcccattgtcatcaagtctaatctttttgtctgtcatttcaggaagatgatagcaaattatatttgtat |
41709977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 383 - 976
Target Start/End: Complemental strand, 14111682 - 14111076
Alignment:
| Q |
383 |
atagaaaactgaacgcttgtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcggttccgacaccaatataacgaatacaaaatttc |
482 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| || ||||||||| |||||| ||| ||||||||||||| |
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|
| T |
14111682 |
atagaaaactgaacgcttgtatgatgtgcttatccaatatcagatgcctgtgttacaattttatgaggttccgaccccaatacaacaaatacaaaatttc |
14111583 |
T |
|
| Q |
483 |
actatagcaatgagtagatctgctc-------------agtggagtgggctaagattaggaactaatctataatatgatgatcgaattccatgattgtaa |
569 |
Q |
| |
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||||||| |||||||||| ||||| | |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
14111582 |
actataggtatgagtagatttgctccacccaaaatgggactggagtgggctaagattatgaactcatttataatatgatgatcgaattccatgattgtaa |
14111483 |
T |
|
| Q |
570 |
gttcattccatttaggataacgatcaggcatttgnnnnnnnacacatctcattatttaaaaccatatatcaccccttttatcataagctgaatcgataac |
669 |
Q |
| |
|
||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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|
| T |
14111482 |
gttaataatatttaggataacgaacaggcatttgtttttttacacatctcattatttaaaaccatacatcacaccttttgtcataagctgaatcgataac |
14111383 |
T |
|
| Q |
670 |
taagtttaactgtccannnnnnngataaaatgtatataagctatcaagtaatttcactgccattatcaagcttgatcaaatctgctatctttgactttgc |
769 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14111382 |
taagtttaactgtccatttttttggtaaaatgtatatatgctatcaagtaatttcactgccattatcaagcttgatcaaatctggtatctttgactttgc |
14111283 |
T |
|
| Q |
770 |
gttgaatttcactctcaatgtctttaagaatgtctaggacaccaagaatacccaaaagcactagtccacctgaaaaattaccaccaccgcctcctccatt |
869 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
14111282 |
gttgaatttcaccctcaatgtctttaagaatgtctaggacaccaagaatacccaaaagcactagtccaccagaaaaattaccaccaccacctcctccatt |
14111183 |
T |
|
| Q |
870 |
accaccattgccatcatcgtcgcgaggtggcaatccaggcccattgtcatcaagtctaatctttttgtctgtcatttcaggaaaatgatagcaaattata |
969 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14111182 |
accaccgtttccatcatcgtcgcgaggtggcaatccaggcccattgtcatcaagtctaatctttttgtctgtcatttcaggaaaataatagcaaattata |
14111083 |
T |
|
| Q |
970 |
tttgtat |
976 |
Q |
| |
|
||||||| |
|
|
| T |
14111082 |
tttgtat |
14111076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 14112498 - 14112421
Alignment:
| Q |
4 |
agatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgat |
81 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
14112498 |
agattgcgttttaaatagtattcgcaatgataaatttccagtgatgtaattcaatatgactaagacagatgcaatgat |
14112421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 14111806 - 14111755
Alignment:
| Q |
108 |
ttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaaca |
159 |
Q |
| |
|
|||| |||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
14111806 |
ttaacttcttctggaggagcaaaagattatggagatagcttaaaatgcaaca |
14111755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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