View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_10 (Length: 469)
Name: NF13114_high_10
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 10132825 - 10133277
Alignment:
| Q |
1 |
cactaaagatggtcagtcatagttccgagcataataactactaaaggtggcaaaaacagacagtaatactttaccccaataaagtaataacatgtttaac |
100 |
Q |
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| T |
10132825 |
cactaaagatggtcagtcatagttctgagcatagtaactactaaaggtggcaaaaacagactgtaatactttaccccaataaagtaataacatgtttaac |
10132924 |
T |
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| Q |
101 |
cnnnnnnntctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaaagcataaatttca |
200 |
Q |
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| T |
10132925 |
caaaaaaatctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaaagcataaatttca |
10133024 |
T |
|
| Q |
201 |
aaatttaaatcatatatatactatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagtatataccatgagag |
300 |
Q |
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| T |
10133025 |
aattttaaatcatatatataccatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagtatataccatgagag |
10133124 |
T |
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| Q |
301 |
tgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagccgtaatcaccatttgatcatccaaaagtgacaaaatttgc |
400 |
Q |
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| T |
10133125 |
tgataaacgagtgagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagctgtaatcaccatttgatcatccaaaagtgacaaaatttgc |
10133224 |
T |
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| Q |
401 |
atcaaaagttcaactggaatatccttccactctctcactgtcatcatcatctt |
453 |
Q |
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| T |
10133225 |
atcaaaagttcaactggaatatccttccactctctcactgtcatcatcatctt |
10133277 |
T |
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Back To:
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 429
Target Start/End: Complemental strand, 40693557 - 40693414
Alignment:
| Q |
286 |
tatataccatgagagtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagccgtaatcaccatttgatcatccaaa |
385 |
Q |
| |
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||||||||| |||||||||||||||| ||| |||| |||| ||||||||||||||| |||||||| |||| | |||||| | |||||||||| | |
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| T |
40693557 |
tatataccaagagagtgataaacgagcaaggccaaagtaaatagaatctctccaaccacgacaaacaccagaaactcgaatcacagtctgatcatccaca |
40693458 |
T |
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| Q |
386 |
agtgacaaaatttgcatcaaaagttcaactggaatatccttcca |
429 |
Q |
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| T |
40693457 |
agagacagaatctgcatcaaaagctcaacaggaatatccttcca |
40693414 |
T |
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