View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_13 (Length: 427)
Name: NF13114_high_13
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 41926831 - 41926428
Alignment:
| Q |
18 |
ataggtcacggcaagcagagaactggtgaggctccagagttttgaaagaatgaaatacctagtcaattagaatgtatagttttcaactctctgttgcagt |
117 |
Q |
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| T |
41926831 |
ataggtcactgcaagcagagaaccggtgaggctccagagttttgaaagaatgaaatacctagtcaattagaatgtatagttttcaactctctgttgcagt |
41926732 |
T |
|
| Q |
118 |
ctgacagtttcagagaacgcacaatagtcttgtggcataagtaaatctgaactagagatgggaagagaaaaagttgaacggctcagtgatgaacctctga |
217 |
Q |
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| T |
41926731 |
ctgacagtttcagagaacgcacaatattcttgtggcataagtaaatctgaactagagatgggaagagaaaaagttgaacgtctcagtgatgaacctctgc |
41926632 |
T |
|
| Q |
218 |
atggaattgatgttctagaagagctaagaaactaggtaagcaaagtcaggatggtgcgatcaacagttattannnnnnncgtggggagtgtagtacctgc |
317 |
Q |
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| T |
41926631 |
atggaattgatgttctagaagagctaagaaactaggtaagcaaagtcaggatggtgcgatcaacagttattagggggggcgtggggagtgtagtacctgc |
41926532 |
T |
|
| Q |
318 |
atcagaatttgattgattttccatgatttattgcaatggtaaatac--taggaaaatgaaactgcacattaatgactgaaaattgatgaataacaaaagt |
415 |
Q |
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| T |
41926531 |
atcagaatttgattgattttccatgatttattgcaatggtaaatactataggaaaatgaaactgcacattaatgactgaaaattgatgaataacaaaagt |
41926432 |
T |
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| Q |
416 |
ttct |
419 |
Q |
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| T |
41926431 |
ttct |
41926428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 36122644 - 36122749
Alignment:
| Q |
181 |
agagaaaaagttgaacggctcagtgatgaacctctga-atggaattgatgttctagaagagctaagaaactaggtaagcaaagtcaggatggtgcgatca |
279 |
Q |
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|||||||| | ||||| ||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
36122644 |
agagaaaaggctgaacagctcactgatgattctctggtatgcaattgatgttctagaagagctaagaaactaggtaagcaaagacaggatgttgcaatcg |
36122743 |
T |
|
| Q |
280 |
acagtt |
285 |
Q |
| |
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|||||| |
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| T |
36122744 |
acagtt |
36122749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 36122482 - 36122610
Alignment:
| Q |
48 |
gctccagagttttgaaagaatgaaatacctagtcaattagaatgtatagttttcaactctctgttgcagtctgacagtttcagagaacgcacaatagtct |
147 |
Q |
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|||||||| ||||| ||| | ||||| || || |||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||| | ||| |
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| T |
36122482 |
gctccagaattttggaagtttaaaatagctggttaattagaatgtatagttttcgactctgcttt--agtctgacagtatcagaaaacgcacaacattct |
36122579 |
T |
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| Q |
148 |
tgtggcataagtaaatctgaactagagatgg |
178 |
Q |
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| T |
36122580 |
tgtggcattagaaaatctgaactagagatgg |
36122610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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