View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13114_high_16 (Length: 392)
Name: NF13114_high_16
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 44574827 - 44574483
Alignment:
| Q |
18 |
agagtaggcactagataaaaggcaacttgatcatactctcatgctgctaaagtttaaatttcataaactctagttctattttagctattgttagat-ctt |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
44574827 |
agagtaggcactagatgaaaggcaacttgatcatactctcatgctgctaaagtttaaatttcataaactctagttctcttttagttattgttagattctt |
44574728 |
T |
|
| Q |
117 |
tttccttagagaagcaccatgtagtttagttttggtctagttttatatgatttgcatctgaatcctttctatctggattagcttagagattagatttaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44574727 |
tttccttagagaagcaccatgtagtttagttttggtctagttgtatatgatttgcatctgaatcctttctatctggattagcttagagattagatttaaa |
44574628 |
T |
|
| Q |
217 |
tttggttacatttggccttcattattataatttggtcaatcagttaaattcattttctttcaagaatacaaactcaaattttagtttttcctatacatta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44574627 |
tttggttacatttggccttcattattataatttggtcgatctgttaaattcattttctttcaagaatacaaactcaaattttagtttttcctatacatta |
44574528 |
T |
|
| Q |
317 |
gcccccacttttcacaatacatgtacattgtgtcaatgatccaat |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44574527 |
gcccccacttttcacaatacatgtacattgtgtcaatgatccaat |
44574483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 25383067 - 25383102
Alignment:
| Q |
326 |
tttcacaatacatgtacattgtgtcaatgatccaat |
361 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25383067 |
tttcataatacatgtacattgtgtcaatgatccaat |
25383102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 10123339 - 10123310
Alignment:
| Q |
332 |
aatacatgtacattgtgtcaatgatccaat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10123339 |
aatacatgtacattgtgtcaatgatccaat |
10123310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 28245095 - 28245066
Alignment:
| Q |
332 |
aatacatgtacattgtgtcaatgatccaat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28245095 |
aatacatgtacattgtgtcaatgatccaat |
28245066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University