View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_18 (Length: 369)
Name: NF13114_high_18
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 107684 - 107336
Alignment:
| Q |
1 |
gaattttatggactagcgcattggctgaagaagatacatttaagattgaaacactaacttcaaaaacaatttagtccttgctaatgaagatgttatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107684 |
gaattttatggactagcgcattggctgaagaagatacatttaagattgaaacaccaacttcaaaaacaatttagtccttgctaatgaagatgttatggac |
107585 |
T |
|
| Q |
101 |
taataaattgacaaatttttatgtactttatgattaaattgtgtgattttgtaagtttagggagatacgtttaatttggcacagaaatcagcatcagtaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107584 |
taa---attgacaaatttttatgtactttatgattaaattgtgtgattttgtaagtttagggagatacgtttaatttggcacagaaatcagcatcagtaa |
107488 |
T |
|
| Q |
201 |
accaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcga |
300 |
Q |
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| T |
107487 |
accaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcga |
107388 |
T |
|
| Q |
301 |
tttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107387 |
tttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatc |
107336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 165 - 352
Target Start/End: Complemental strand, 88159 - 87972
Alignment:
| Q |
165 |
atacgtttaatttggcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagc |
264 |
Q |
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| T |
88159 |
atacatttgatttagcacagaaatcagcatctgtaaaccaagtctcatcaacaacaacatcaggagttcgaggcttcccattataagcaacagcagcaat |
88060 |
T |
|
| Q |
265 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatc |
352 |
Q |
| |
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|||||| ||||| ||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||| |
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| T |
88059 |
agaagaagttaaaacaacacgtttgagtgatggggatttagcacatgagttgagaacattgagagtccctttgagagcaggatcaatc |
87972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 2707190 - 2707050
Alignment:
| Q |
193 |
atcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagt |
292 |
Q |
| |
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||||||||||||||||||||| ||||| ||||| ||||| ||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| || |
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| T |
2707190 |
atcagtaaaccaagtttcatcgacaactacatcgagagtttgaggctttttattgtacgcaaccgcagcgatagaagaggttaatacaacacgtttcaga |
2707091 |
T |
|
| Q |
293 |
aatggcgatttggcacatgatttgagaacattgagagtccc |
333 |
Q |
| |
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| T |
2707090 |
gatggaaattttgcacatgatttcagcacatttagagtccc |
2707050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 165 - 352
Target Start/End: Original strand, 44784703 - 44784890
Alignment:
| Q |
165 |
atacgtttaatttggcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagc |
264 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
44784703 |
atacgtttgatttagcacagaaatcagcatcagtaaaccaagtctcatcaacaacaacatcaggagttcgaggctttccattgtatgcaacagcagcgac |
44784802 |
T |
|
| Q |
265 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatc |
352 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||| |
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| T |
44784803 |
agaagatgttaagacaacacgtttgagtgatggggattttgcacatgagttgagaacattgagagtccctttgagcgcaggatcaatc |
44784890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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