View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_29 (Length: 296)
Name: NF13114_high_29
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_29 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 21384656 - 21384379
Alignment:
| Q |
18 |
agaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggt |
117 |
Q |
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| T |
21384656 |
agaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagagga |
21384557 |
T |
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| Q |
118 |
aagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgccccacttta-tttgtttaaagtttaagggcta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
21384556 |
aagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagt--tatgccccactttattttgtttaaagtttaagggcta |
21384459 |
T |
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| Q |
217 |
atgaatttcccatgctttaataagttaatattggtgtaaagttttacaccgttgaaactcctagataggatttggtgttt |
296 |
Q |
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| T |
21384458 |
atgaatttcccatgctttaataagttaatattggtgtaaagttttacaccgttgaaactcctagataggatttggtgttt |
21384379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 21372901 - 21373108
Alignment:
| Q |
18 |
agaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372901 |
agaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagagga |
21373000 |
T |
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| Q |
118 |
aagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgccccactttatttgtttaaagtttaagggctaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21373001 |
aagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgccccactttatttgtttaaagtttaagggctaa |
21373100 |
T |
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| Q |
218 |
tgaatttc |
225 |
Q |
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|||||||| |
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| T |
21373101 |
tgaatttc |
21373108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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